Ll_transcript_501036

Id TrinityTRINITY_DN47320_c2_g1_i2
Name TranscriptLl_transcript_501036
SequenceGTTATGTGGTGTTTCGCCGCATGGAAACCACTTTCAAGTTCCAACTTATTCCCGAAGCGCGCCAAATCAACGACGAACCATCTCCCTCACTCTCTTAAAC CACCATCGCCGGCGCTGCAGCGCCACCACCACCACCACCACCACCACCGCGATAACAACCATGGGAAAACAAAAGCAACTAGTCATTTCCCGTTTTTTCG CACCCAAATCCCAAACCCCTCCTTCAGCCACCGCTTCCTCTAACCCCAATCCTCCAACTCCCAAAAAAATCACCGCCACCGTTACTTTCTCTCCATCCAA ACGCGCCCTAACTTCTCAACTAACTCCCTCTCCCAAACCACCCAAATTCCCCAAACTACCCTCTCAACCCGACCCTTCTCTCCACCAGCGCTTCCTCCAC AAGCTTCTAGAACCTTCCACCGACCCTCCACAAACCCACCACCCTTCCACGCCGTTCAAATACACTCCGTTACAGCAACAAGTAGTGGAACTCAAACGTA ACTACCCTGACGTTCTCTTAATGGTTGAAGTTGGTTATAGATACCGTTTTTTCGGCCAAGATGCTGAAAATGCTGCTAAGGTTTTAGGTATATATTCTCA CATGGATCATGATTTTTTAACCGCTAGCATACCGACTTTTCGATTAAATGTCCATGTGAGGAGGCTTGTTAACGCTGGATATAAAGTTGGTGTGGTTAAG CAGACTGAGACTGCAGCCATTAAGGCTCACGGTTCGAACCGGTTAGGTCCGTTTTGTCGAGGATTGTCTGCCTTGTACACCAAGGCTACATTAGAGGCGG CGCTGGATATAGGGGGAGCGGAAGAAGGGTGCGGTGGAGAGAGTAATTACTTGATGTGTGTTGTGGAGAAGAGTGTTTTGAGAGAGAAATTGAATTGTGC AGTGGACAGTGGTTTTGATGTGAGCATTGGATTTGTTGCTGTGGAGATATCAACAGGGGATGTGGTTTATGGAGAGTTCAATGATAATTTTCTAAGGAGC GCACTTGAATCTGTGGTTTTGAGCTTGTCTCCTGCTGAATTGCTTCTTGGGGACCCTCTTTCCAAGGAAACAGAGAAGTTATTGCTGGCTTTTGCTGGAC CTGCTTCAAATGTTCGCGTGGAGCGAGCCTCACAAGATTGCTTCGCTAATAGAGGTGCTCTCGCTGATGTTATGACCTTGTTTGAGAACATGGATGCAGA CAGTCCATCAGATTCAATGAAAAGTAATGATTTGGCTGAGTGCAGAAGTCAGCAGTTGGTAGTTAAGGACATTATGAACATGCCAGATTTGGCTGTCCAA GCTTTGGCCTTAACTATTCGGCATTTAAAGGAATTTGGTTTTGAAAGTACTCTACGTTCAGGAGCTTCTTTAAGGCCCTTCTCAAGCAATATGGAAATGA CCCTCTCAGCCAATGCACTTCAACAATTGGAGGTTTTAAAGAATAGCAATGATGGATCCGAGAGTGGTTCCTTGCTGCGGATTATGAATCATACTCTTAC TATATTTGGTTCCAGGCTTCTTAGGCACTGGGTATCTCACCCATTGTGTGACAGAGTCTTGATTTCTGCTCGTCTTCATGCTGTATCTGAAATCGCAGAG TCCATGGGATCTTGTAATGGTACGAAGAATATTGGATATGAGGAGGAAGAAGATGATGTAACAGCTGTACGCCCTGAGTTAGCTTACATACTGTCGTTGG TTTTGACAACTCTGGGTTGCAAACCTGATATACAGCGTGGGATTACAAGAATTTTCCATCGCACTGCTACCCCATCTGAGTTTGTTACAGTTATTCAAGC TATTTTGTCTGCCGGAAAACAGCTTCAGCAGCTTAACATAGCAGAGGACGATAATAATACATTGCACTCTAATCTGTTGAAAAAGTTAATTTTGACTGCT ACCTCTGCCAGTGTTATTGGTAATGCTGCAAAAATGTTGTCATCTTTAAACACAGACTCTGCTGATCCAGGTGATCTAACAAATTTGATCGTTGCATCTG AGGGACAATTTCCAGAGGTTGTTACAGCTCGGAAGAATTTTCAGATGGCGGAGGAACAATTAGAATCGCTGATTACATTGTATCGCAAACAGTTTGGAAT GCGAAGTTTGGAATTCATGACTGTTTCTGGAACAACTCATTTGATAGAGTTTTCCACTGAAGTAAAGGTGCCATTAAACTGGGTCAAGGTAAATAGCACA AAGAAAACAATACGGTATCACCCTCCTGAAGTAGTGGTAGCATTAGACAAGTTATCATTAGCAAAAGAGGAGCTTACTGTTGCCTGCCGAGTTGCTTGGG ATAGCTTTCTAAGGGACTACAGTAAACACTATCCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTC AACAAATAAGGGATATGTCTGTCCTGTATTTGTAGGTGATAACGAGCCTGTTCAGATACAAATTTGTTCTGGTCGACATCCGGTTTTGGAGACTATCTTA CAAGACAATTTTGTCCCAAATGATACGTATATGCATGCAGACAGAGAGTACTGTCAGATTATTACTGGGCCGAATATGGGGGGTAAAAGTTGCTATATTC GCCAGGTGGCTTTGATCGCTATAATGGCTCAGCATCATCAGCAAAACTGCATGTCCTGGATGGGATCTACACCCGAATGGGTGCTTCAGACAGTATTCAG CAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTTCATAACTGCACAGGACATTCACTGGTTATCATTGATGAGCTTGGGAGAG GTACTAGTACACATGATGGTATGGCCATTGCATATGCGACATTGCATTATCTTCTAAAGCAAAAAAGAAGCATGGTCCTCTTTGTCACTCACTATCCAAA GATTGCCGACCTCAGAACTGAATTTCCAGACTCGGTAGGAGCATATTATGTGTCCCATCTGACCGCATACGATGATACAAGTAGAACCTCCAACTTGGAT AATGAAGATATCACTTATCTATACAAGCTTGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTGGCCCAGCTTGCACAGCTACCACCACATTGCA TTAGTCGAGCCATTGTCATGGCTTCCAAATTAGAAGCACTGGTAAACAGTAGAATACAAAGTAGATCGGGAAGGGAGCTACTGTTGGATGCATTGGTAAC TGATCAAGAGCAAGAACCACATCAGCTCTCGTCTCAACCACAGGAATGTCCAAGTCAAGAATTTGATAGCGCTTGCAAGGAATTCTATTCATACTTAAAA GCTGCAACTCTAGATGATGATGATGATGATGACGACCATGCAAAAAGCTTTCAACTTTTGGAGCATGCTAGAAGCATTGCAGAGAAATTAATTGCAGATG AAGGCAATTATTATAAGTGAGATAAATGACATGTATCATAAACATGCAGAAGCAGGGGTTAAGAAGGTCTCCAGTGTTGTAGATAATATTTTGCATCCCA ATTTTGTTGTTTTCAATTTGGTTAGGCCTTCTAGTTCCTAGCTGTATATATTTTTGTGATTTTGGTTATATGCTTGGGAAACTTATTGTGCTGTGCATGG CTGTTCTAATTTTGGCCAATGAGAGTTTTACTGTGGTGATATGTCCGAATTAGTTAGTCGGTCTCTTTTTAGTTATCGATTGACAATGATATTTTATACA TGTGAGACTTTTTCATTCACACTTGGAATACGATTAATGTTTTCCAAAGTGTGGAGTAGGTGTGAAGTGAGAATCCCACTCAATACTAGGAATAGAATCA TGTGTAACCAAGAACTAAGTATTTACTTAAATATATGTTTTGTTTTTTTGTCG BLAST
Tissuepods
Gene nameLI_gene_151668; 
Additional informationdetails; 

Expression of Ll_transcript_501036

Labels

PAB abscising pods
PNAB non-abscising pods
PS1 seeds stages 1-3
PS2 seeds stages 4-6
PS3 seeds stages 7-8
PW1 pods wall stages 1-3
PW2 pods wall stages 4-6
PW3 pods wall stages 7-8

Annotations of Ll_transcript_501036
BlastpDNA mismatch repair protein MSH3 from Arabidopsis with 61.89% of identity
BlastxDNA mismatch repair protein MSH3 from Arabidopsis with 61.24% of identity
Eggnogthat it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
KeggLink to kegg annotations (AT4G25540)
CantataDB-
Mirbase-
Ncbi proteinLink to NCBI protein (XP_019442140.1)
PfamMutS domain I (PF01624.19)
Rfam-
GOLinks to GO: General; Genes and gene products; Annotations; Ontology;
Links to GO: General; Genes and gene products; Annotations; Ontology;