Ll_transcript_501039

• Id Trinity: TRINITY_DN47320_c2_g1_i3
• Name Transcript: Ll_transcript_501039
• Sequence: GTTATGTGGTGTTTCGCCGCATGGAAACCACTTTCAAGTTCCAACTTATTCCCGAAGCGCGCCAAATCAACGACGAACCATCTCCCTCACTCTCTTAAAC CACCATCGCCGGCGCTGCAGCGCCACCACCACCACCACCACCACCACCGCGATAACAACCATGGGAAAACAAAAGCAACTAGTCATTTCCCGTTTTTTCG CACCCAAATCCCAAACCCCTCCTTCAGCCACCGCTTCCTCTAACCCCAATCCTCCAACTCCCAAAAAAATCACCGCCACCGTTACTTTCTCTCCATCCAA ACGCGCCCTAACTTCTCAACTAACTCCCTCTCCCAAACCACCCAAATTCCCCAAACTACCCTCTCAACCCGACCCTTCTCTCCACCAGCGCTTCCTCCAC AAGCTTCTAGAACCTTCCACCGACCCTCCACAAACCCACCACCCTTCCACGCCGTTCAAATACACTCCGTTACAGCAACAAGTAGTGGAACTCAAACGTA ACTACCCTGACGTTCTCTTAATGGTTGAAGTTGGTTATAGATACCGTTTTTTCGGCCAAGATGCTGAAAATGCTGCTAAGGTTTTAGGTATATATTCTCA CATGGATCATGATTTTTTAACCGCTAGCATACCGACTTTTCGATTAAATGTCCATGTGAGGAGGCTTGTTAACGCTGGATATAAAGTTGGTGTGGTTAAG CAGACTGAGACTGCAGCCATTAAGGCTCACGGTTCGAACCGGTTAGGTCCGTTTTGTCGAGGATTGTCTGCCTTGTACACCAAGGCTACATTAGAGGCGG CGCTGGATATAGGGGGAGCGGAAGAAGGGTGCGGTGGAGAGAGTAATTACTTGATGTGTGTTGTGGAGAAGAGTGTTTTGAGAGAGAAATTGAATTGTGC AGTGGACAGTGGTTTTGATGTGAGCATTGGATTTGTTGCTGTGGAGATATCAACAGGGGATGTGGTTTATGGAGAGTTCAATGATAATTTTCTAAGGAGC GCACTTGAATCTGTGGTTTTGAGCTTGTCTCCTGCTGAATTGCTTCTTGGGGACCCTCTTTCCAAGGAAACAGAGAAGTTATTGCTGGCTTTTGCTGGAC CTGCTTCAAATGTTCGCGTGGAGCGAGCCTCACAAGATTGCTTCGCTAATAGAGGTGCTCTCGCTGATGTTATGACCTTGTTTGAGAACATGGATGCAGA CAGTCCATCAGATTCAATGAAAAGTAATGATTTGGCTGAGTGCAGAAGTCAGCAGTTGGTAGTTAAGGACATTATGAACATGCCAGATTTGGCTGTCCAA GCTTTGGCCTTAACTATTCGGCATTTAAAGGAATTTGGTTTTGAAAGTACTCTACGTTCAGGAGCTTCTTTAAGGCCCTTCTCAAGCAATATGGAAATGA CCCTCTCAGCCAATGCACTTCAACAATTGGAGGTTTTAAAGAATAGCAATGATGGATCCGAGAGTGGTTCCTTGCTGCGGATTATGAATCATACTCTTAC TATATTTGGTTCCAGGCTTCTTAGGCACTGGGTATCTCACCCATTGTGTGACAGAGTCTTGATTTCTGCTCGTCTTCATGCTGTATCTGAAATCGCAGAG TCCATGGGATCTTGTAATGGTACGAAGAATATTGGATATGAGGAGGAAGAAGATGATGTAACAGCTGTACGCCCTGAGTTAGCTTACATACTGTCGTTGG TTTTGACAACTCTGGGTTGCAAACCTGATATACAGCGTGGGATTACAAGAATTTTCCATCGCACTGCTACCCCATCTGAGTTTGTTACAGTTATTCAAGC TATTTTGTCTGCCGGAAAACAGCTTCAGCAGCTTAACATAGCAGAGGACGATAATAATACATTGCACTCTAATCTGTTGAAAAAGTTAATTTTGACTGCT ACCTCTGCCAGTGTTATTGGTAATGCTGCAAAAATGTTGTCATCTTTAAACACAGACTCTGCTGATCCAGGTGATCTAACAAATTTGATCGTTGCATCTG AGGGACAATTTCCAGAGGTTGTTACAGCTCGGAAGAATTTTCAGATGGCGGAGGAACAATTAGAATCGCTGATTACATTGTATCGCAAACAGTTTGGAAT GCGAAGTTTGGAATTCATGACTGTTTCTGGAACAACTCATTTGATAGAGTTTTCCACTGAAGTAAAGGTGCCATTAAACTGGGTCAAGGTAAATAGCACA AAGAAAACAATACGGTATCACCCTCCTGAAGTAGTGGTAGCATTAGACAAGTTATCATTAGCAAAAGAGGAGCTTACTGTTGCCTGCCGAGTTGCTTGGG ATAGCTTTCTAAGGGACTACAGTAAACACTATCCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTC AACAAATAAGGGATATGTCTGTCCTGTATTTGTAGGTGATAACGAGCCTGTTCAGATACAAATTTGTTCTGGTCGACATCCGGTTTTGGAGACTATCTTA CAAGACAATTTTGTCCCAAATGATACGTATATGCATGCAGACAGAGAGTACTGTCAGATTATTACTGGGCCGAATATGGGGGGTAAAAGTTGCTATATTC GCCAGGTGGCTTTGATCGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGATGGGATCTACACCCGAATGGG TGCTTCAGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATACTTCATAACTGCACAGGACATTCACTGGTTATC ATTGATGAGCTTGGGAGAGGTACTAGTACACATGATGGTATGGCCATTGCATATGCGACATTGCATTATCTTCTAAAGCAAAAAAGAAGCATGGTCCTCT TTGTCACTCACTATCCAAAGATTGCCGACCTCAGAACTGAATTTCCAGACTCGGTAGGAGCATATTATGTGTCCCATCTGACCGCATACGATGATACAAG TAGAACCTCCAACTTGGATAATGAAGATATCACTTATCTATACAAGCTTGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTGGCCCAGCTTGCA CAGCTACCACCACATTGCATTAGTCGAGCCATTGTCATGGCTTCCAAATTAGAAGCACTGGTAAACAGTAGAATACAAAGTAGATCGGGAAGGGAGCTAC TGTTGGATGCATTGGTAACTGATCAAGAGCAAGAACCACATCAGCTCTCGTCTCAACCACAGGAATGTCCAAGTCAAGAATTTGATAGCGCTTGCAAGGA ATTCTATTCATACTTAAAAGCTGCAACTCTAGATGATGATGATGATGATGACGACCATGCAAAAAGCTTTCAACTTTTGGAGCATGCTAGAAGCATTGCA GAGAAATTAATTGCAGATGAAGGCAATTATTATAAGTGAGATAAATGACATGTATCATAAACATGCAGAAGCAGGGGTTAAGAAGGTCTCCAGTGTTGTA GATAATATTTTGCATCCCAATTTTGTTGTTTTCAATTTGGTTAGGCCTTCTAGTTCCTAGCTGTATATATTTTTGTGATTTTGGTTATATGCTTGGGAAA CTTATTGTGCTGTGCATGGCTGTTCTAATTTTGGCCAATGAGAGTTTTACTGTGGTGATATGTCCGAATTAGTTAGTCGGTCTCTTTTTAGTTATCGATT GACAATGATATTTTATACATGTGAGACTTTTTCATTCACACTTGGAATACGATTAATGTTTTCCAAAGTGTGGAGTAGGTGTGAAGTGAGAATCCCACTC AATACTAGGAATAGAATCATGTGTAACCAAGAACTAAGTATTTACTTAAATATATGTTTTGTTTTTTTGTCG
• Tissue: pods
• Gene name: LI_gene_151668;
• Additional information: details;

Expression of Ll_transcript_501039

FPKM

• PAB: 0
• PNAB: 0.7
• PS1: 0.4
• PS2: 0.7
• PS3: 1
• PW1: 0.2
• PW2: 0.5
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_501039

• Blastp: DNA mismatch repair protein MSH3 from Arabidopsis with 60.63% of identity
• Blastx: DNA mismatch repair protein MSH3 from Arabidopsis with 60.13% of identity
• Eggnog: that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
• Kegg: Link to kegg annotations (AT4G25540)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019442140.1)
• Pfam: MutS domain I (PF01624.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;