| Id Trinity | TRINITY_DN47339_c5_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_501116 |
| Sequence | CACAAAAACACTACAACCTTGTATTCTTACTTGTTTCTACCACTTTCATATTCTCATTTCATCAAAAAGAAACATAACCCATAAAACAAAAGTAGAAAAA AAACAACATGGCCTTTACAAAAGAAATCATGGGTTCTTCATTGAAAATACAAGGATTTCTTCCACACAATAATACCTTTTTCCAACACAACAATCAAAGC CATTTTCTTGGGAACCCTGTCCCTATATTTTTGTCTCCTATGCAAAACAGAAGAGATTTAAGGTTGAGAAAAAGTGTGAAGTTTCCTGTGGCAGCTATAA GTGAGGATTTGATTAAGGGCTATGTGAAACAACATGCAGAAAGACCAATTCAGTTCAAGGTTAGAGCTGTAATAACTGTTAAGAACAGGAGCAAACAAGA TATTAAAGACACCATTGTTAAGCATTTTGATACCATCACTGATAAGATTGGAAGAAATGTTGTGTTACAACTTATCAGCACTGAAATTGATCCAAAAACA AAAGCTTCAAAGAAGAGCAATGAGTCAGTGGTGAAGGATTGGTCTAAGAAATCAAAAGTTAAAGCAGAAAGAACACATTACACAGCTGAATTCATAGTGG ACTCAAATTTTGGGGTACCAGGAGCAATAACTGTAACAAATAAACACCAAAGAGAGTTCTTCATAGAAAGTATAGCCATTGAAGGGTTTGCAAGTGGAGT AGTACATTTCCCTTGTAATTCATGGGTACAACCCACAACAAAGGATCATCATGGAAATAGGATATTCTTTTCTAACAAGCCATATTTACCTGGAGAAACA CCTGCTGGGCTTAAATTATTAAGGGAAAAGGAGCTGAAAAATCTTAGAGGTGATGGAAAAGGAGTTAGATTATCATCTGATAGAATATATGATTTTGATA CATACAATGATCTTGGAAATCCAGATAAAGGAGTTGACTTTGTTAGACCAATCTTGGGTGAATCTAAAAATTATCCATATCCAAAACGATGTCGTACTGG TCGAGCCTCAACTGATACAGATATACATGCAGAGAGTGTTGTGGACAATCCAAGGCTAGTGTATGTACCAAGAGATGAACAATTTGATGAATCTAAGATG AAAACATTTTTTGCAAAGAGGGTTGATGCAGTGCTCCATACCATGATCCCTAGCATTAAGGCTAATCTTTCTGCTAATAACCAAGACTTCAACAATTTCT CAGATGTTGATGATCTCTATAATGAAAAGTGTCTCAATAAGTCGGGTTTGAATGGTGACAGTGTGAAGAAATTACCAGAAGTTGTTACCAAAATACAAGA ACACAGCAAAGGAATTCTTAAGTTTGACACTCCCAAGATTATTGCCAAGGATAAATATGCATGGCTGAGAGATGAAGAATTTGCTAGACAAGTAATAGCA GGAGTAAACCCTGTTAACATTGAGAGACTTCAAGTTTTCCCACCTTTGAGCAAGCTTGACCCTGAAATTTATGGCCCTCAAGAATCTGCTCTTAAAGAAG AGCACATTTTAGGCCAACTTAATGGCATGACTGTGCAACAGGCAATAGAGGAAAATAAGCTGTTTATGATAGACTATCATGATGTATACCTTCCATTTGT TGATAAGATCAATGCCCTTGATGATAGAAAATCATATGCTACACGCACCATTTTCTTCTTGACACCCTTAGGCACTCTCAAACCTATTGCTATAGAACTT AGCCTTGCTCATGGTGGACCAAGTTCAAGATCAAAACAAGTAGTTACACCTCCTATGGATGCAACTACTACTTGGATATGGCAACTTGCTAAGGCTCATG TTTGTGCCAATGATGCTGGTGTGCACCAACTTGTTAATCATTGGTTGAGGACTCATGCATGCATGGAACCATTTATATTGTCAGCACATAGACAATTAAG TGCAATGCATCCAATTTTCAAGTTGTTGGATCCACACATGAGGTACAACTTGGATATCAATTCTATAGCTCGCCAAAGACTCATCAATGCTGGTGGAATC ATTGAGTCAAGCTTCACTCCTGGCCGCTATTGCATGGAGATTAGTTCTGCTGCTTACAAAAACTCGTGGCGCTTTGACAAGGAAGGCCTCCCTGCTGATC TCATACACAGGTAGATGTCTCACATTCTCACTATACATTGTCTTGCACCATCAAGATATCATTTATCATTCATGTGTAGTACTTTTATTAAAGAGTCAAT TGATTGCTAACATGTGAATGGTGGATGTTATAGTGACAGTGTAAAAACCTCTTACACTATCGGTGCATGGAATATCTTCTATATTTGATTAGGTTTGCCC TTCAAGGTTCAAAACTTGATGTTGGTAATACTTGAAAAGAGACCCAAGTACCTTCTTAAGTCTAAGTTGGATGTGCTTCATTAGGGTAATGAATCTAACA TTTTGACATGGCAGGGGAATAGCTGTACCTGACTCAACACAACCAAATGGTCTAAAGCTTCTCATAGAAGACTACCCATATGCAAAAGATGGGCTTTTAA TCTGGTCAGCAATTGAGAACTGGGTCCGCACCTATGTGAACCACTACTACCATCATCCAAGCATGATTTGCAATGATAAAGAGTTACAAAGATGGTACTC CGAGTCGATCAATGTGGGTCACGCAGATCTCAGACACGAGACCTGGTGGCCCACATTGAACAATGGTGAGGATCTTGTCAATATCCTCACCACATTGATT TGGATATCATCAGCACAACATGCAGCTCTTAACTTTGGACAGTACCCTTATGGAGGTTATGTACCAAATCGTCCACCATTAATGAGAAGACTAATCCCAC AAGAAGGTGATCCAGAATATGCAAATTTCCTAGATGACCCACAAAAGTATTTCCTAAATGCATTGCCTAGTTTGCTACAAGCTACAAAATATATGGCTGT GGTTGACACATTATCTACTCACTCACCAGATGAAGAGTACTTGGGAGAAAGGAATCAGCCATCTATTTGGTCAGGTGATGCACAAATCATTGATGCATTC TATCAATTCTCGGCAGAGATTGGAAGAATAGAGAAAGAGATTGAGAAAAGAAACCATGATGCAACACTAAGGAACCGATGTGGCGCAGGAGTAATACCTT ATGAGTTACTTGCACCTAGCTCTGGACCTGGTGTTACATGTAGAGGAATTCCTAATAGTGTCTCCACATAAAAGTGCCCCAAAAATAAGTGCCACTACAA CCAAATAGCAACATTAAGAGAAACTATTGCATGATTAGGATTGCATGGCCCGGGATCAAATAGTCTTGGCCAATAACATGGCGCTTCTAGGCAGTTAGAC CATATTTGTCACCACCATGTGATTCCGACCCTGCAATAAGTTCTCATAGTTTTGAGAGGCATTATGGTTGCCTTACTAGTTACTTTATAGCATGGTCTAG AATACAAGACAATGCTCAGTTTGTACCTACATAAGATTAATTAGGTATCCTAGGGTTGTATAGGCTGTATATCAAATAGAGTTCAAGAATATTTGTTGTG TAACTATTTATACAATCAATGATACTATTATATTTATTTCCTCCâBLAST |
| Tissue | pods |
| Gene name | LI_gene_151780; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_501116
| Blastp | Linoleate 13S-lipoxygenase 3-1, chloroplastic from Solanum with 68.09% of identity |
|---|---|
| Blastx | Linoleate 13S-lipoxygenase 3-1, chloroplastic from Solanum with 67.94% of identity |
| Eggnog | Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding (By similarity)(ENOG410YN4N) |
| Kegg | Link to kegg annotations (102597498) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423369.1) |
| Pfam | PLAT/LH2 domain (PF01477.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |