| Id Trinity | TRINITY_DN47339_c5_g3_i4 |
|---|---|
| Name Transcript | Ll_transcript_501121 |
| Sequence | CACAAAAACACTACAACCTTGTATTCTTACTTGTTTCTACCACTTTCATATTCTCATTTCATCAAAAAGAAACATAACCCATAAAACAAAAGTAGAAAAA AAACAACATGGCCTTTACAAAAGAAATCATGGGTTCTTCATTGAAAATACAAGGATTTCTTCCACACAATAATACCTTTTTCCAACACAACAATCAAAGC CATTTTCTTGGGAACCCTGTCCCTATATTTTTGTCTCCTATGCAAAACAGAAGAGATTTAAGGTTGAGAAAAAGTGTGAAGTTTCCTGTGGCAGCTATAA GTGAGGATTTGATTAAGGGCTATGTGAAACAACATGCAGAAAGACCAATTCAGTTCAAGGTTAGAGCTGTAATAACTGTTAAGAACAGGAGCAAACAAGA TATTAAAGACACCATTGTTAAGCATTTTGATACCATCACTGATAAGATTGGAAGAAATGTTGTGTTACAACTTATCAGCACTGAAATTGATCCAAAAACA AAAGCTTCAAAGAAGAGCAATGAGTCAGTGGTGAAGGATTGGTCTAAGAAATCAAAAGTTAAAGCAGAAAGAACACATTACACAGCTGAATTCATAGTGG ACTCAAATTTTGGGGTACCAGGAGCAATAACTGTAACAAATAAACACCAAAGAGAGTTCTTCATAGAAAGTATAGCCATTGAAGGGTTTGCAAGTGGAGT AGTACATTTCCCTTGTAATTCATGGGTACAACCCACAACAAAGGATCATCATGGAAATAGGATATTCTTTTCTAACAAGCCATATTTACCTGGAGAAACA CCTGCTGGGCTTAAATCATCATGGAAATAGGATATTCTTTTCTAACAAGCCATATTTACCTGGAGAAACACCTGCTGGGCTTAAATTATTAAGGGAAAAG GAGCTGAAAAATCTTAGAGGTGATGGAAAAGGAGTTAGATTATCATCTGATAGAATATATGATTTTGATACATACAATGATCTTGGAAATCCAGATAAAG GAGTTGACTTTGTTAGACCAATCTTGGGTGAATCTAAAAATTATCCATATCCAAAACGATGTCGTACTGGTCGAGCCTCAACTGATACAGATATACATGC AGAGAGTGTTGTGGACAATCCAAGGCTAGTGTATGTACCAAGAGATGAACAATTTGATGAATCTAAGATGAAAACATTTTTTGCAAAGAGGGTTGATGCA GTGCTCCATACCATGATCCCTAGCATTAAGGCTAATCTTTCTGCTAATAACCAAGACTTCAACAATTTCTCAGATGTTGATGATCTCTATAATGAAAAGT GTCTCAATAAGTCGGGTTTGAATGGTGACAGTGTGAAGAAATTACCAGAAGTTGTTACCAAAATACAAGAACACAGCAAAGGAATTCTTAAGTTTGACAC TCCCAAGATTATTGCCAAGGATAAATATGCATGGCTGAGAGATGAAGAATTTGCTAGACAAGTAATAGCAGGAGTAAACCCTGTTAACATTGAGAGACTT CAAGTTTTCCCACCTTTGAGCAAGCTTGACCCTGAAATTTATGGCCCTCAAGAATCTGCTCTTAAAGAAGAGCACATTTTAGGCCAACTTAATGGCATGA CTGTGCAACAGGCAATAGAGGAAAATAAGCTGTTTATGATAGACTATCATGATGTATACCTTCCATTTGTTGATAAGATCAATGCCCTTGATGATAGAAA ATCATATGCTACACGCACCATTTTCTTCTTGACACCCTTAGGCACTCTCAAACCTATTGCTATAGAACTTAGCCTTGCTCATGGTGGACCAAGTTCAAGA TCAAAACAAGTAGTTACACCTCCTATGGATGCAACTACTACTTGGATATGGCAACTTGCTAAGGCTCATGTTTGTGCCAATGATGCTGGTGTGCACCAAC TTGTTAATCATTGGTTGAGGACTCATGCATGCATGGAACCATTTATATTGTCAGCACATAGACAATTAAGTGCAATGCATCCAATTTTCAAGTTGTTGGA TCCACACATGAGGTACAACTTGGATATCAATTCTATAGCTCGCCAAAGACTCATCAATGCTGGTGGAATCATTGAGTCAAGCTTCACTCCTGGCCGCTAT TGCATGGAGATTAGTTCTGCTGCTTACAAAAACTCGTGGCGCTTTGACAAGGAAGGCCTCCCTGCTGATCTCATACACAGGTAGATGTCTCACATTCTCA CTATACATTGTCTTGCACCATCAAGATATCATTTATCATTCATGTGTAGTACTTTTATTAAAGAGTCAATTGATTGCTAACATGTGAATGGTGGATGTTA TAGTGACAGTGTAAAAACCTCTTACACTATCGGTGCATGGAATATCTTCTATATTTGATTAGGTTTGCCCTTCAAGGTTCAAAACTTGATGTTGGTAATA CTTGAAAAGAGACCCAAGTACCTTCTTAAGTCTAAGTTGGATGTGCTTCATTAGGGTAATGAATCTAACATTTTGACATGGCAGGGGAATAGCTGTACCT GACTCAACACAACCAAATGGTCTAAAGCTTCTCATAGAAGACTACCCATATGCAAAAGATGGGCTTTTAATCTGGTCAGCAATTGAGAACTGGGTCCGCA CCTATGTGAACCACTACTACCATCATCCAAGCATGATTTGCAATGATAAAGAGTTACAAAGATGGTACTCCGAGTCGATCAATGTGGGTCACGCAGATCT CAGACACGAGACCTGGTGGCCCACATTGAACAATGGTGAGGATCTTGTCAATATCCTCACCACATTGATTTGGATATCATCAGCACAACATGCAGCTCTT AACTTTGGACAGTACCCTTATGGAGGTTATGTACCAAATCGTCCACCATTAATGAGAAGACTAATCCCACAAGAAGGTGATCCAGAATATGCAAATTTCC TAGATGACCCACAAAAGTATTTCCTAAATGCATTGCCTAGTTTGCTACAAGCTACAAAATATATGGCTGTGGTTGACACATTATCTACTCACTCACCAGA TGAAGAGTACTTGGGAGAAAGGAATCAGCCATCTATTTGGTCAGGTGATGCACAAATCATTGATGCATTCTATCAATTCTCGGCAGAGATTGGAAGAATA GAGAAAGAGATTGAGAAAAGAAACCATGATGCAACACTAAGGAACCGATGTGGCGCAGGAGTAATACCTTATGAGTTACTTGCACCTAGCTCTGGACCTG GTGTTACATGTAGAGGAATTCCTAATAGTGTCTCCACATAAAAGTGCCCCAAAAATAAGTGCCACTACAACCAAATAGCAACATTAAGAGAAACTATTGC ATGATTAGGATTGCATGGCCCGGGATCAAATAGTCTTGGCCAATAACATGGCGCTTCTAGGCAGTTAGACCATATTTGTCACCACCATGTGATTCCGACC CTGCAATAAGTTCTCATAGTTTTGAGAGGCATTATGGTTGCCTTACTAGTTACTTTATAGCATGGTCTAGAATACAAGACAATGCTCAGTTTGTACCTAC ATAAGATTAATTAGGTATCCTAGGGTTGTATAGGCTGTATATCAAATAGAGTTCAAGAATATTTGTTGTGTAACTATTTATACAATCAATGATACTATTA TATTTATTTCCTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_151780; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_501121
| Blastp | Linoleate 13S-lipoxygenase 3-1, chloroplastic from Solanum with 72.93% of identity |
|---|---|
| Blastx | Linoleate 13S-lipoxygenase 3-1, chloroplastic from Solanum with 72.67% of identity |
| Eggnog | Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding (By similarity)(ENOG410YN4N) |
| Kegg | Link to kegg annotations (102597498) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423369.1) |
| Pfam | Lipoxygenase (PF00305.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |