Ll_transcript_502197

• Id Trinity: TRINITY_DN47341_c0_g3_i3
• Name Transcript: Ll_transcript_502197
• Sequence: GGAATTGTGAGTTTTCTCTTTATTTTTGTCAAGTTATAATAGAATGTTTCACTGAATGTGGTTGTCATACTGGTTTATGTCTTATTTGTTATGCTGAACT TATATTTTTTACTATAGTATGTCTTGTGGTTACTGGATCAACCCTTTTCTTTTAACATTACTTTCTATGACTTTCTTTTACCTGAGTGTCACATTCCATA TCATACTTTATTCAATTCTGCTCTCCTTCATTTTCTTTTGCCACAGGCATGACAATGCCATCTTCTTTCCTCTTCTGAAAAATGCGGAGGAGAACAATAT TTTGGTTATTAACTTGTCTTGTTTATGCATGTGTGGATCAGTGGATCTCATCTCCATTTTGCTTTTGTGCATTTTGTCTGCGTTTGCTTTATTTGCAGGA CAACGTCAGTCAATGTTGTTTTATTGCTACTTATCCTGCACAATCTATTAATCTCTTATATATTATGATGTTGAAAACGTGAAATCTGTGGGGAATGTTG AACAAAAATGTTTGGGTTGCGTATGCCATATGATATTTTGACAATGTCTAGGGGGAAGTATATGCATTTTTATTCGACATTTATATGGGGGTTTCAAATT TTCTGAGGTGGCCATGGATCATAGGAACTACAATAGCCTTTGACATGTCATTTGCATGCACACTGAAATGCTTGTTACAAGAGGCTGTTTATGTTACTTG TATCATATACTGTGTCTGCAATCTTGTTATTTTGTTTAGTGAACTTATTTGTTTTTTGTTACTAAATAATTTGGTCAACAAATTTATATTTTTTAATGAT TCTTATATTCTATCTGTAGTTTTACCTTAGCACTGAGTGATGAACATGCAATATCTCTTGCAGTACAAGCTGGATGTGGCGTTGATCCAATTAATTACTT CGGAAATGAGCATATTAATTCCATGAGTCAGCCTACTAAACGAAGCAGCGAAATGGAAAATATCTCAAAGCATCAAAAGCTTCAGATTTCCTTAAATTAC AACATCTGTCAAGATGATGCTAATCGATCAGGAATCATTCCAAACCGTAACCCTGTGTCAACTGGATTGAGGCTTTCATATGATGACGATGAGCACAACT CATCTGTCACGTCCAGTGGCAGTATCAGTGCCACACCTTCAATCATGTTGTCCCTTGGTGACAATATCCGAGCTGAGCTTGATAGGCAGCAAGATGAGTT GGACCAGTATATTAAACTTCAGGTATACATTATAGCTGCTCTCTTCTTTCAATTCATGATGTTGGTTATGGGATATCTTCTGGGTGCCAATGATCTATGC TTAATATATTTCTATTCTTTAGAAAGGTATGCATGCTAGCTTGTGGCCTTGGCTTAATCCAATAGGAAAAGGGGAAAAAATATATGCATACTCTTCAAAT TGTCGAGTCATAGTTTTGTATTTGGGGCCTGTGCTCGAAAGTTCTGAATTGATTTTTGTTTTATCTATTACACAATAATACTTTGAACTTAAAGTGGCAC TCTGATAATGGAGTTATCAACTGGACATGATTGTAGTTCTGTGATTTTATTTTAATTCCTTTCTACACAGAAGGAACAATTGTCAAAAGGTGTAAGAGAC ATAAAGCAAAAACACATGGCCACTCTCCTTACATCCATTGAGAAAGGTGTCTGTAAGAAGCTAAGGGAAAAAGATGTGGAGATAGAGAACATGAACCGGA AGAACAGGGAGCTAGCAGAGAGAATAAAACAGGTGGCTATTGAAGCACAAAACTGGCACTACAAAGCAAAGTATAACGAGTCAGTTGTCAATGTGCTAAG GAACAATCTCCAGCTTGCCATTTCACAAGGAGTCGAACAAGGGAAGGAAGGGTTTGGGGATAGCGAAGATGATGACGCCGCATCATACATAGATCCCAAT AACTTCCTGAGCATCCCGGCCGTGCCTATGAAGTCTACTTACAAGAGCTGCCAAGGCATGGAGAATATGAGTTGCAGGGCATGCCAGGCAAAGGAGGTAT CTATGTTGTTAATGCCTTGTAGGCACCTGTGCTTGTGTAAGGACTGTGATGGGTTTGTGAATGTTTGCCCTGTATGCCAATTGATAAAAACCGGAAGTGT TGAGGTCCATATGTCTTAACCTACAAAGGGTAGGTATTAAAAATGGAAAATATGTCACTTTTCTTGTGTGATTTTACTACAAGTAAAAATATTTGAGACT CATGTACCAAGAGAAAGTACTTATCACTAAAAGTTGATTACTTCCAAGTATTTCTATCTAAATTTTCTTGTGTTATCTTCTTCCTCCTCGCCCTCTTATT TTATGTAATGTTTTTCATTAAGATTTAACTTACTACTTATGTGATGCATACATTATTGTGATCGGGAG
• Tissue: pods
• Gene name: LI_gene_151803;
• Additional information: details;

Expression of Ll_transcript_502197

FPKM

• PAB: 0.2
• PNAB: 0.3
• PS1: 0.3
• PS2: 0.3
• PS3: 0.2
• PW1: 0
• PW2: 0.2
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_502197

• Blastp: Probable BOI-related E3 ubiquitin-protein ligase 3 from Arabidopsis with 36.47% of identity
• Blastx: Probable BOI-related E3 ubiquitin-protein ligase 3 from Arabidopsis with 33.16% of identity
• Eggnog: protein binding zinc ion binding(ENOG4111S1X)
• Kegg: Link to kegg annotations (AT3G12920)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019445443.1)
• Pfam: Zinc finger, C3HC4 type (RING finger) (PF13920.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;