| Id Trinity | TRINITY_DN47352_c0_g1_i28 |
|---|---|
| Name Transcript | Ll_transcript_501440 |
| Sequence | ATCGTCTACTATATATGACAGCGGCTAAAGTGGATTCTGAGATGTTATCGCGTGTTGTTCTTTTATTCTGATTTTGCGACGCTCTCTTCTCTTCTCTTCT TTCTGGAGACTAACTCTTCGGTGAGAAAGTGCAAGCAATGGATGAGGTCAAGAAGCATAAATCTAGGAAAGACGGGGATTCTAAGCGGAGTCACCGTGAT CCAGATCGTAATGCCGATAAGAGAGATTCCGAGACGCGGCGTCATGATAAAGACAAGAATAGTGATTCTGAAGATAGGCATGATAGAGATAGGGAGAAAC GTAAGGATAAGGAAAGGACCCGAGTCAAGGATGTAGATAAAGAGCGAACTCGAGACAAGAAAGTCGAAAGAGATAGGGATGACAAGGAAAGGGAGAGGAG CGATAGGGTGAGAGAAAAAGATCGAGACAAGGTTAAGGAGAAGCGACGAGAGAAAGATAGGGAAAGGGAAAAGGAAAGGGAAAGGGAAAGGGAAAGGAGG GAGCGTGCGAGGGAGAAGGAAATAGAAAGAGAAAAGGGGAGGAGAGGACACGAGAGGGAGAAGCGTAGGAACGTTGATAGCAAAAACAGTGATGATGAAT CGAGGGAGAGAGATAGGAAGCGGCATAGGAAAGATGATGATGATTACAAGGGGCGAGAGAGGGAAAGGATTGTCAGCAAGTCGAACAGGCAAACTGAGAA TAGTGAAGCTAGCCCAAGGAAGAAGAGTAGTGAAGATGAGGACGGTACTAAAGATGATGAGAGTAAACCTACACGCGAAGAGGAGATGGAGATTGAACAA AGGAGACTGGATGATGAAATGGAAAAGAGGCGGAGGAGAGTTCAAGAGTGGCAAGAGCTTAAGAGGAAGAGAGAAGAAACAGAAAGAGAAAAGCAAGGTG AAGCCAGTGCTGATGAACCTGAGTCCAGGAAGACTTGGACCCTTGAAGGGGAATCTGATGATGAAGAAGGACCGGCTGCTGGGAAACAGGACACAGCTAT GGATGTAGATGAAGATGAAGATGAAAAACCTGCTGACAAGGAACCTATGGATTTGGTGGTAAGTCATGATAATGGAACAGTTGCGTCCGACTTACAGGAT GGAAATACTGGTGCTCCTGAAGATGAAGAGATCGATCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAAGTTGAAAAGCTGAACAATGCTGCAG CCTTGTCACTTACTGATAAAGCTGCTGACTTGAAGCCCAAGGATAAGGAGGATGAGCAAAGTCGTGGTGGACAGGCAAGGAAAGGTTCAAATAAATCTAT CGGGAGAATAATTCCCGGTGAAGAGTTTGACTCAGATACTGCAGATCTTGAATTTGAGGGGGATCCATCCGATGAAGATGATGATGAGTTCATGAAAAGA GTGAAGAAAACAAAAGCTGAGAAGCTTTCTATAGTTGACCACTCGAAAATTGATTATATGCCATTCAAGAAAAACTTTTTTATTGAAGTGAAAGAGATAT CGAAGATGACTCTTGAAGAAGTTGCATTATATAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCGAAGCCTGTAAAATCATGGCACCAGAC TGGACTTACCAGCAAAATTTTGGACACAATAAAGAAGATGAACTACGAAAAGCCGATGTCTATTCAAGCTCAGGCGCTGCCAATAATCATGAGTGGTCGA GACTGCATAGGCATTGCTAAAACTGGTTCTGGCAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCAGGAG ATGGACCTATTGGGCTTATTATGGCCCCCACAAGAGAGCTTGTTCAACAGATTCACAGTGACATAAAGAAGTTTTCAAAGGTAATGGGTATCAGGTGTGT GCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGCACTCCAGGTAGGATGATCGACATACTA TGCACCAGTAGTGGAAAAATAACCAACCTGCGTCGAGTCACTTATCTGGTTATGGACGAGGCTGATCGAATGTTTGACATGGGATTTGAACCTCAAATCA CACGTATTGTTCAGAATATCCGGCCTGATCGTCAAACGGTTCTCTTCTCTGCTACTTTCCCCCGTCAGGTCGAAATTCTGGCTCGTAAAGTTTTGAATAA ACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAACACAGACTGTTGAGGTGAGGCCAGAAAATGAGAGGTTCTTTAGACTCTTA GAAATATTGGGGGAATGGTGTGAGAAAGGAAAGATTTTGATATTTGTTCACTCACAAGAGAAATGTGATGTTTTGTTCAAGGATTTGCTCAGGCATGGTT ATCCATGCCTTTCTCTTCATGGGGCCAAGGATCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTTTGCAATTTGTTGGTTGCAACAAG TATTGCTGCCAGGGGATTAGACGTCAAGGAGCTTGATTTGGTCATTAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACT GGCCGTGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCCGAGGAAGATGCAAGATATGCACCAGATCTGGCAAAAGCCTTGGAGCTATCTGAGCAGG TTGTTCCCAATGACCTGAAAGCTCTTGCTGATAGCTTTATGGCGAAAGTGAATCAAGGACTTGAGCAAGCCCATGGAACTGGTTATGGAGGCAGTGGATT TAAATTTAATGAAGAGGAAGATGAGGTGAGGAAGGCAGCAAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAA GATGACGGTATCAGGAAGGCAGGTGGTGACATCTCACAACATCCGGCTCTTGCTCAGATTCTTGCTGCCCAGAAAGTGAATTCTCCAGCAATGCCGAATC CCATCTCCGTTGGCCAGCCGATTTCAAATGGCGGGATACCTTCTTTGTCAGCTGTTCTTGGTCTCCAGACCGCAACAGTCTTGCCTGGGAATGATGTGGC AGCTCGAGCAGCATTAGCTGCTATAAACCTGCAGCACCACTTAGCAAAGATACAATCTGAAGCATTGCCAGAGCATTATGTGGCCGAGTTGGAGATAAAT GATTTCCCCCAGAATGCTCGCTGGAAAGTGACGCACAAGGATACTTTAGGCCCAATTTCTGACTGGACTGGAGCTGCAATTACCACTAGGGGGCAGCATT TTCAACCTGGCAAGATCCCGGGACCTGGAGAACGCAAACTCTACTTGTTCATTGAGGGTTCCAGTGAGCAGTCTGTTAAGAGAGCTAAAGCAGAGTTGAA GCATGTTTTGGAAGACTTCACAAATTTGCAACTTCCTGGTGGAACTCAACCAGGGAAATACTCCGTCGTATGAAGGATTTTGGCTTGGAGTTCTTTCATG ATCATATCACGAGGGGAAACAAGGCGTAATGGGATATCGCATTATTGCCATAGTATGGATTTCAGAACGTGTACCAAAAACAATGCCCATGGCTCTTATA CTTATCCTATCTAGAAAGAACTCTCAAATTCTGCATTTGTATTGCAATTCATAGGAATGTTATAAAATATTATATGGTTTGCTTAAAGCATTTCTTGGAA TTGTGGATGGAAAATTTTTGGCGACATTTTTCAAACAACTCTTATATTACATTATCTTTTTATTTATCTCTCTTTAATTACCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_151908; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_501440
| Blastp | DEAD-box ATP-dependent RNA helicase 42 from Arabidopsis with 69.87% of identity |
|---|---|
| Blastx | DEAD-box ATP-dependent RNA helicase 42 from Arabidopsis with 70.41% of identity |
| Eggnog | ATP-dependent RNA helicase(ENOG410XSQV) |
| Kegg | Link to kegg annotations (AT1G20920) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019444598.1) |
| Pfam | DEAD/DEAH box helicase (PF00270.28) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |