| Id Trinity | TRINITY_DN47385_c2_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_501065 |
| Sequence | AGAAGACCAAAATATAGTCACTCTTCCTTATCTTGCAGTCAACGAGTCTCTGTCTGTGATACAAACAGTAAAATGCAGAAAGAAGAAAGCAAGAAATGTT GGATTTAGTTGAAAATGGGTTTAAGCAGCACCACTGCTAAACTTTCAGAACTCCCTCTCAGGACATCACTCTCACCATTCACTACTCTCAACTCTATCTT CTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCACTTTTCTCATACCAATTTCAACAAATTCCCACTTCAATTTCTCAAC TCTTTTTCTTCTTCTTCAACCATTCATCGAAACTATTCATCAAACACCTTATCTTCACCTTGGCTCACTAAATGGCCATCCAATCCCAACCCACCACCCT ACCGGAAAACGCTTCCCGATTCCAACCCCCACGACGGCGACGACGGCCTCTTCGACCCAATCGTTGACACTCGCTATTCCCGCAACAATGATAACGATAA ACCCAGCAACGCAATCGACAGAGTCGTTCTTAGCCTTCGCAATCTAGGGTTACAAGACGAAGAACAACAAGAACATGGAGTGAATGAAGTAAGTGGCGAT TTTTTAGGACGAGAATGGATTCGGCCTGATACTAGTTTTCGTGAGGATAGTGATGACATGGTTTTGCCATGGGAGAAAGAGGAAGTGGAAGAGGAAAAAG GGGAAATAGAGGGAGAGAAAAATGGGTTGAGGAAGAGAAGGGTAAAGGCGAAAACTTTGGCGGAGATGACTCTTGATGAAGAGGAAATGAGGCGATTGCG AAGAATTGGAATGCAGCTTAGAGATAAAGTTAATGTGCCAAAGGCTGGTCTCACTCATGTTGTGTTGGATAAGATTCATGATGGTTGGAGAAAGAGTGAG ATGGTGAGACTCAAGTTTCATGAGGTTCTTGCAAAGGATATGAAGGCTGCTCATCAAATTGTTGAGCTTCGAACAAGAGGATTAGTTATATGGAGGGCAG GAAGTCTTATGCTGGTGTACCGTGGTAGAAATTATGAATGGCCAACATCCGGAAGCCAACTGAATAAGAGTTTGTTAAGAACAGAAGGCGATAATGCAAC CTCATCTCTGGAAGAGAATGAGCCAGTTATGAGGAATCAAGGACAGCCTGAGATGACACCGGAGGAAGCAGATTTCAACAGACTGCTTGATGATTTAGGT CCTCGGTTTGTTGAATGGTGGGGTACAGGAATACTTCCCGTTGATGCTGATTTACTTCCTCCTACAGTTCCTGGTTACAAAACACCTCTTAGGCTTCTTC CTGCTGGAATGCGTCCACGACTGACTGATGCGCAGCTGACAAATATGCGAAAAATTTCCAAACCTCTTCCTTGTCATTTTGCCTTAGGGAGAAATAGAAA TCATCAAGGTCTGGCCTCTGCTATTCTTAAGCTTTGGGAGACAAGCTTAGTTGCAAAGATTGCTATTAAGCGTGGTATCCAGAATACAAACAGCGAACTA ATGGCTGAGGAACTGAAGAAGCTTACAGGAGGTGCAGGAGGTTGAGGACATGGTGCGGTCTGGAGCTGTTGATGTAACACCATCAGAGGAAGGTGAAACA ACAGCACAAGCAGGAACATTAACTGAGTTCTATGAGGCTCAGGTACGCTGGGGAAGGGATGTATCTAGCGAAGAACATGAGAAGATGATGAAAGAGGCAG CCAAAGTCAAGAATGTTAAGCTTTTCAAAAAGATTGAACACAAACTAGCTCGTGCTCAGGTCAAAAGGCTTAGAGCAGAAGAGCTGTTACGTAAAGTTGA AGCATCTCTGGTTCCAGCTGGTCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGCAGGGTTGGTTTGAGTATGAAGGCATAC TTGGAACTTGGTACACGTGGTGTTTTTGATGGTGTCATTGAGAATATGCATTTGCATTGGAGGCACCGAGAACTTGTTAAATTAATAACAAAACAAAAGA CCCTCACTTTTGTTGAAGACACGGCTAGGTTACTGGGATATGAGAGTGGTGGAATATTAGTCTCAATAGATAGAGTTCCCAAAGGATTTACTCTTATTTA CTACCGTGGAAAGAATTATAGGCGACCCATTACTCTGAGGCCTAGAAACCTTCTAACAAAGGCAAAAGCATTGAAGCGTGCAATAGTCATGCAACGCCAC GAGGCTCTGAGTCAGCATATATCTGAATTGGGGGAAAAAATAGAAGAAATGAGAAAAGGACTTGCTTCGTCACAAGATTTGAAACCTGAAGATGGGTGCA GCATAGAAGACCGTAATCAAATACACCACATATCAGAATTTGCCCAAAGTGAGGATGAAGGTAGTGATTATGATGATAGTGATGCTGGGTTTGATTATGA AGATGACAGTAGTTGGGATGATGAGGATTCTGAGTGTCCAAACTTAGAAAATGATGGGTATCCTTTGAAGGCAGGTTGACACATTCTTTCAAGTTTCTTA AGTTCCTGGAAGAACTCTGCCATTGCCCGCAGCAAGCTGGGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_152170; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_501065
| Blastp | CRM-domain containing factor CFM2, chloroplastic from Arabidopsis with 40.6% of identity |
|---|---|
| Blastx | CRM-domain containing factor CFM3, chloroplastic/mitochondrial from Zea with 44.13% of identity |
| Eggnog | poly(a)-specific ribonuclease(ENOG410XS9D) |
| Kegg | Link to kegg annotations (AT3G01370) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019446260.1) |
| Pfam | CRS1 / YhbY (CRM) domain (PF01985.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |