Ll_transcript_501071

• Id Trinity: TRINITY_DN47385_c2_g1_i9
• Name Transcript: Ll_transcript_501071
• Sequence: AGAAGACCAAAATATAGTCACTCTTCCTTATCTTGCAGTCAACGAGTCTCTGTCTGTGATACAAACAGTAAAATGCAGAAAGAAGAAAGCAAGAAATGTT GGATTTAGTTGAAAATGGGTTTAAGCAGCACCACTGCTAAACTTTCAGAACTCCCTCTCAGGACATCACTCTCACCATTCACTACTCTCAACTCTATCTT CTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCACTTTTCTCATACCAATTTCAACAAATTCCCACTTCAATTTCTC AACTCTTTTTCTTCTTCTTCAACCATTCATCGAAACTATTCATCAAACACCTTATCTTCACCTTGGCTCACTAAATGGCCATCCAATCCCAACCCACCAC CCTACCGGAAAACGCTTCCCGATTCCAACCCCCACGACGGCGACGACGGCCTCTTCGACCCAATCGTTGACACTCGCTATTCCCGCAACAATGATAACGA TAAACCCAGCAACGCAATCGACAGAGTCGTTCTTAGCCTTCGCAATCTAGGGTTACAAGACGAAGAACAACAAGAACATGGAGTGAATGAAGTAAGTGGC GATTTTTTAGGACGAGAATGGATTCGGCCTGATACTAGTTTTCGTGAGGATAGTGATGACATGGTTTTGCCATGGGAGAAAGAGGAAGTGGAAGAGGAAA AAGGGGAAATAGAGGGAGAGAAAAATGGGTTGAGGAAGAGAAGGGTAAAGGCGAAAACTTTGGCGGAGATGACTCTTGATGAAGAGGAAATGAGGCGATT GCGAAGAATTGGAATGCAGCTTAGAGATAAAGTTAATGTGCCAAAGGCTGGTCTCACTCATGTTGTGTTGGATAAGATTCATGATGGTTGGAGAAAGAGT GAGATGGTGAGACTCAAGTTTCATGAGGTTCTTGCAAAGGATATGAAGGCTGCTCATCAAATTGTTGAGCTTCGAACAAGAGGATTAGTTATATGGAGGG CAGGAAGTCTTATGCTGGTGTACCGTGGTAGAAATTATGAATGGCCAACATCCGGAAGCCAACTGAATAAGAGTTTGTTAAGAACAGAAGGCGATAATGC AACCTCATCTCTGGAAGAGAATGAGCCAGTTATGAGGAATCAAGGACAGCCTGAGATGACACCGGAGGAAGCAGATTTCAACAGACTGCTTGATGATTTA GGTCCTCGGTTTGTTGAATGGTGGGGTACAGGAATACTTCCCGTTGATGCTGATTTACTTCCTCCTACAGTTCCTGGTTACAAAACACCTCTTAGGCTTC TTCCTGCTGGAATGCGTCCACGACTGACTGATGCGCAGCTGACAAATATGCGAAAAATTTCCAAACCTCTTCCTTGTCATTTTGCCTTAGGGAGAAATAG AAATCATCAAGGTCTGGCCTCTGCTATTCTTAAGCTTTGGGAGACAAGCTTAGTTGCAAAGATTGCTATTAAGCGTGGTATCCAGAATACAAACAGCGAA CTAATGGCTGAGGAACTGAAGAAGCTTACAGGAGGTACCTTGCTGATAAGGAATAAATATTACATTGTAATATATCGCGGGAACGACTTTGTTCCAACCT GTGTAGCTGCTGTTTTAACTGAAAGACAGGAATTGACAAAACAGGTGCAGGAGGTTGAGGACATGGTGCGGTCTGGAGCTGTTGATGTAACACCATCAGA GGAAGGTGAAACAACAGCACAAGCAGGAACATTAACTGAGTTCTATGAGGCTCAGGTACGCTGGGGAAGGGATGTATCTAGCGAAGAACATGAGAAGATG ATGAAAGAGGCAGCCAAAGTCAAGAATGTTAAGCTTTTCAAAAAGATTGAACACAAACTAGCTCGTGCTCAGGTCAAAAGGCTTAGAGCAGAAGAGCTGT TACGTAAAGTTGAAGCATCTCTGGTTCCAGCTGGTCCTGATTATGACCAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGCAGGGTTGGTTTGAG TATGAAGGCATACTTGGAACTTGGTACACGTGGTGTTTTTGATGGTGTCATTGAGAATATGCATTTGCATTGGAGGCACCGAGAACTTGTTAAATTAATA ACAAAACAAAAGACCCTCACTTTTGTTGAAGACACGGCTAGGTTACTGGGATATGAGAGTGGTGGAATATTAGTCTCAATAGATAGAGTTCCCAAAGGAT TTACTCTTATTTACTACCGTGGAAAGAATTATAGGCGACCCATTACTCTGAGGCCTAGAAACCTTCTAACAAAGGCAAAAGCATTGAAGCGTGCAATAGT CATGCAACGCCACGAGGCTCTGAGTCAGCATATATCTGAATTGGGGGAAAAAATAGAAGAAATGAGAAAAGGACTTGCTTCGTCACAAGATTTGAAACCT GAAGATGGGTGCAGCATAGAAGACCGTAATCAAATACACCACATATCAGAATTTGCCCAAAGTGAGGATGAAGGTAGTGATTATGATGATAGTGATGCTG GGTTTGATTATGAAGATGACAGTAGTTGGGATGATGAGGATTCTGAGTGTCCAAACTTAGAAAATGATGGGTATCCTTTGAAGGCAGGTTGACACATTCT TTCAAGTTTCTTAAGTTCCTGGAAGAACTCTGCCATTGCCCGCAGCAAGCTGGGTATAAATTCTTTATTGTTTATTTTTATAGGCAATGGTTATTTTTGT TAAAGGGGAGAGGGAGTGCAGTCGTTGGCGTTTGAACCCAGATACTCACTCCATATCCCGCAACTGAGCTGCCTTGTTCACTTTCATTTGTATGTTCGTA ATAATGATTTTCATATACTACGTTTAAAAAAAAGATTAATTGCCACAGTGCTGTTGCCAACTTGCTATAGTTTAGTTCTGACTATTGTGCAGTTTAATAA AATAGTTTGCACAACAATATTTTGCCATATTGATTGTTTGTTCAACAGGTTTTGGGATCAATTTGGTTATTTTGTCAGTATTTCCCCCGGACATTGAGTC ATGCTTCCAGTTGTTTGATGGTTCTTCCTCTGCACATTCTTGTAGCTGAAAGTTCGGAATTCGATTTACTCAGTTCTGGAGAGATGTGTTCACAAAATCA ATCACCAATTCATTACCAGCTGACTGCCTTGAGATTTTATCTTCTAGGTCTAACTAACTTTTGAGCAGTATGGACAAGCAATATGCTTTCTTTGTATGTT ATTCTGATAATATTTATTTAAAAAAGATCAGAAATTAGTAGATGAGAGGGGGCAATAGCACAAAAGAAGAGGATAAGACATCCTCGGATAATGTTATTCT GGTAGTTATGGGTTTCCTGGTTTTTGAAGTCTTGTTTCTTCCTTCAATGGCTTCTTGTACCCCATAGTAAATGTAACATGTATAAATGGATGAGAAACAA TTTTGGCTACTGTCATATGAGCAAAATAGCATTTGTTCAC
• Tissue: pods
• Gene name: LI_gene_152170;
• Additional information: details;

Expression of Ll_transcript_501071

FPKM

• PAB: 0.2
• PNAB: 0.6
• PS1: 0.5
• PS2: 0.4
• PS3: 0.8
• PW1: 1.1
• PW2: 0.8
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_501071

• Blastp: CRM-domain containing factor CFM3, chloroplastic/mitochondrial from Zea with 42.99% of identity
• Blastx: CRM-domain containing factor CFM3, chloroplastic/mitochondrial from Zea with 46.14% of identity
• Eggnog: poly(a)-specific ribonuclease(ENOG410XS9D)
• Kegg: Link to kegg annotations (100126360)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019446257.1)
• Pfam: CRS1 / YhbY (CRM) domain (PF01985.20)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;