Ll_transcript_499825

• Id Trinity: TRINITY_DN47391_c0_g2_i3
• Name Transcript: Ll_transcript_499825
• Sequence: AATAAACTACATAAAATAATATTAGAGCGAGGAAATCGCAAAGGAGTGTGACAAAGCTGTAGTGAGTGAGAGAAAGAGAACACAGAGAGTGAAGCAATGG CCGAGTACGAAGAGATATACGAAGAGAACGGAGAAGAGAAGGACCATCACAATTCTCACGCCCATTCCGATTTTTCTCCGCCTCCGAACGCTGATCTCAC TGAATCCAAATCTCACTACGGATCTCGTGATTATGGTAGAGAATCTTCCAGAAGCAGAGAAAGGGAACGAGAGAAAGGGAGAGAAAAGGAGAGAAAAAGA GATAAGGGGAGGGACAGGGATAGAGAGAGAAGCGGAGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAAGGACATGGATA GAGAGAAAAGCAGAGATACGGAGAGAAGCAGGGACAGGTATAGAGAGGGAAGCAGAGAGAGGGAACAAGATCAGGATGGAGAGAATGAAAGAGACCGTGA CAGGGACCACCATCGTAGAGATCGGCACAGGGATCATAGTGAGAGAAGGGAAAGGGGAAGAGATAGAGATGACGATGATTATTACAGAATCCGTGACTAT GATAGACGAAGAGATTACGACAGAGAGGATAGGCATAGGCGCAGGTCCCGGTCTCGATCTACTTCAATGTCAAGGCGTAGATCTGAGCATAGATCAAGAT CTCGTTCTCGTTCACGTTCAAAAAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCAGCACTGTTAGCTGGTGCTTCTGCTGTTACAGGTCA GATGATTGCGACAAATGCTGCAATTCCTGGAGTGTTTCAAAATATGTTTCCATTGGCTACAAGTCAGGTGCAGCCATTCAGTGCTCTCCCTGTCATGCCA GTGCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCCAATGAGCAGTCAGTTGCTACTTTCTTCA GTCAAGTTATGGCTAACATTGGAGGGAACACTGCCGGCCCAGGTGATGCCGTGGTCAATGTTTACATTAACCATGACAAGAAGTTTGCCTTTGTAGAGAT GAGGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTAGATGGTATTATTTTTGAGGGGGCACCTGTTAAGGTTAGGAGACCTACTGATTATAATCCTTCT CTAGCTGCTACCTTAGGCCCAAGCCAACCTAACCCAAATCTTAACCTGGGTGCTGTTGGCTTGACACCTGGGTCGGCTGGTGGACTTGATGGGCCTGATC GGATTTTTGTGGGTGGACTTCCTTATTACTTCACTGAAACACAGATCAGGGAGCTTTTAGAGACATTTGGTCCTCTAAGGGGTTTTGATTTGGTGAAAGA CAGAGAAACTGGAAACTCGAAGGGCTATGCATTTTGTGTTTACCAAGACCTCGCAGTTACAGATATTGCATGTGCAGCTCTCAATGGAATAAAAATGGGA GATAAGACTCTGACTGTTAGACGAGCTAATCAAGGTTCAAACCTGGTGCAGCCTAAACCTGAGCAAGAGAGCATTTTAATGCACGCACAGCAGCAGATTG CCCTGCAGAAACTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTTTGCTTAACTCATGCAGTTGCTGCTGATGAACTCAAAGATGATGAGGACTA CGAAGAGATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTACTTTGGTGAATGTGGTGATCCCTCGCCCACGACCAGATGGTGAACTGGCCCCT GGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGTTGGATTGAACGGAAGAAAATTTGGTGGAAATCAAGTTATAG CTGTGTTTTATCCAGAGAACAAATTCGCCCAAGGAGATTATGAAGGCTAGTTGAATTGCTATGACATTGTATCTTAAAAGATTTCTTCTTACAGGAGCTG CATGCATTTCGTATAATACAGAAACTTATGGATTCTATTTTATTTTATCTGATGGCTGTAAGATAGTGATTGCGATTATGGAGAATGGGTAGGGATGATG AAAAGGTACCAAATGCAAAACTATGAAGATGTTATGGTAATTTGTTAAAGGGCAAGGATATCTAAACACCTCCCTTACTTTTACTTGCAATCCCAATTAG CCGTAGATATCAAATATCTAAATACTCATGGGTTGAAAATAGATGACAGGCTTAACAAGGGTTGAATTGTGATAACCTATTTTCGAAAACACACTTTTTA AAAAAAAGTAGTTTTTTAACACTCCATATAAG
• Tissue: pods
• Gene name: LI_gene_152244;
• Additional information: details;

Expression of Ll_transcript_499825

FPKM

• PAB: 9.8
• PNAB: 28.8
• PS1: 41.2
• PS2: 27.5
• PS3: 36.5
• PW1: 29
• PW2: 27
• PW3: 22.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_499825

• Blastp: Splicing factor U2af large subunit B from Nicotiana with 81.48% of identity
• Blastx: Splicing factor U2af large subunit B from Nicotiana with 81.68% of identity
• Eggnog: -
• Kegg: -
• CantataDB: Link to cantataDB annotations (CNT0000929)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440703.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;