Ll_transcript_499838

• Id Trinity: TRINITY_DN47391_c0_g2_i6
• Name Transcript: Ll_transcript_499838
• Sequence: AATAAACTACATAAAATAATATTAGAGCGAGGAAATCGCAAAGGAGTGTGACAAAGCTGTAGTGAGTGAGAGAAAGAGAACACAGAGAGTGAAGCAATGG CCGAGTACGAAGAGATATACGAAGAGAACGGAGAAGAGAAGGACCATCACAATTCTCACGCCCATTCCGATTTTTCTCCGCCTCCGAACGCTGATCTCAC TGAATCCAAATCTCACTACGGATCTCGTGATTATGGTAGAGAATCTTCCAGAAGCAGAGAAAGGGAACGAGAGAAAGGGAGAGAAAAGGAGAGAAAAAGA GATAAGGGGAGGGACAGGGATAGAGAGAGAAGCGGAGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAAGGACATGGATA GAGAGAAAAGCAGAGATACGGAGAGAAGCAGGGACAGGTATAGAGAGGGAAGCAGAGAGAGGGAACAAGATCAGGATGGAGAGAATGAAAGAGACCGTGA CAGGGACCACCATCGTAGAGATCGGCACAGGGATCATAGTGAGAGAAGGGAAAGGGGAAGAGATAGAGATGACGATGATTATTACAGAATCCGTGACTAT GATAGACGAAGAGATTACGACAGAGAGGATAGGCATAGGCGCAGGTCCCGGTCTCGATCTACTTCAATGTCAAGGCGTAGATCTGAGCATAGATCAAGAT CTCGTTCTCGTTCACGTTCAAAAAGGTAAGTCATGGGAAGATCCTTAGCATCAAGTGTATAAAAATGAATGGCTACATGTTGCTTGTGACTGTCATTTTG GAAAATCCTAATTTCTGTTTCATCATAAAATAAAATAGTTGGCACATGTGCAAGTGAAACTAGTGTAATGATGTTGTGAATGGCTGTCAATTAGAGAAAT AGTTAATATAGTTGAAAAGCTGTTTTATTTCAGATCTTATTTCCAATACTTCCTTCATAATTTTAGTTTGAGAGAAAATATACAATTATATTTCTTGGCT GAAATATTGTTTATGACCACATACTGTGTATTGATTACTACATTAAAATCTCTCCTTTTGAATTGTGTTAGATCATTAGATGCGGTTTTGTTTTACTTTG TCTTTTTTCTATTGTTTTGCTCTTTCACGTCCCTTTAGAGTTTAGATATGGTCGAATCTCAAATCCTCAATGTTTCCTCTTACTTTGAATTTATGAAAAT ATTTGTATACACTTACATATATATTCTATATGAGTATTTTAATTATTATTTTCATAATATCTTTAGTTCATTTTGCTACTGATAATTTTATAGAAGAATT ATTAGTGGATAGTTATACCCAGATGTAGACAGAAGATTCAAATACAGAATTACAGATTGATTGTATCTATATTTGGAAAAAACACCATAATTGGCTGTGA AACGATTTTGTAATGTATTACACAATAATGGTGCTAATTGTAACATTAGAAACCAGTTGGAAGTTCCGTGTTAATTGACCATTTATTGTTGGAGGTTATA GATTTTCCCTGCAATTTGTAGTTTTCAAATGCTATTTATTAATTGCTATTGTCAGAGCCACATATATATTATGTCAACATTATAGTTTTACTGTGGATGA TGAGCTTGGTCCAACAGTGAGGTTGATGCTTAGTGACCATGAGATCATGGGTTCAAGTCTGGAAACACCCTCTCGGCTTGCGGGGGTAGAGCTGTGTGCG TCTACCTTTCCCATACCCCACTGAGAATCTCGTGTACCGGACCACCCTTTTATTATAGTTTTACTGCATTCAAATCCTGTTAAAATACAGTTATTTTCAG TGACTTCGTACCCATTAATATGTTTCTCCCACATGATTTTTTTTTGTTAATTGAAAATACCACTAATGTAAATGTGCTACAAATCTTAAGTTCATATTTT ATATATTTCAATATTCTGAATAGAATTTATCCACCTATTGTAAAATGTTTCTTGGCATGAAAGGTCACATGTATTATTGGAATACTAAATTCATTTACTT ACAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCAGCACTGTTAGCTGGTGCTTCTGCTGTTACAGGTACATTTACTCTCATATATCATGC ATCTGATTTTTTAATCTTAACTGCTTTGTTCCTTTTGTTCTAGTATGGAAAATTCATATCAAATTGCATGGTGCTTACTTGGTAAGAAATGTTCTGTTAT TATATGAATATATAGCTCCTTGAAGACTGGTTTCCCATGCTCTGTAATTGTCTTTCTTTTAACTTTTGATTTAATTCTGGAACTAAAAGATGCTTTGGTT TTTGTCTTGTGTTTGGTGTTTCTTTTGTTTTTGTCTTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTAGCCCCAATGTGCTGACAATGGCCTGAGC CGACATTTGTAGCTTTATTGTCCACGGAGGAATGAATGCACCAGTTTTTGGTGGGTCTGGTTCGTCTACATCTGGAAACTGTTGGCCACTTTGGTAGACT TGCAAATATTATCTCTAAAATTTGTTTAGAATGTTCCTTTGATCTTGTTAAAATGATATATGCATTGAGCTTAAATTATGCTTAAGCTGATGCAAATTGG GGCTAAAGGAGTCATTTGATACTTATGCATTACCACCCAAAAAGATTAAAACACAGTTTGTTCTGAGATACAATACCTTTCTGTACCCTTTGCAGGTCAG ATGATTGCGACAAATGCTGCAATTCCTGGAGTGTTTCAAAATATGTTTCCATTGGCTACAAGTCAGGTGCAGCCATTCAGTGCTCTCCCTGTCATGCCAG TGCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCCAATGAGCAGTCAGTTGCTACTTTCTTCAG TCAAGTTATGGCTAACATTGGAGGGAACACTGCCGGCCCAGGTGATGCCGTGGTCAATGTTTACATTAACCATGACAAGAAGTTTGCCTTTGTAGAGATG AGGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTAGATGGTATTATTTTTGAGGGGGCACCTGTTAAGGTTAGGAGACCTACTGATTATAATCCTTCTC TAGCTGCTACCTTAGGCCCAAGCCAACCTAACCCAAATCTTAACCTGGGTGCTGTTGGCTTGACACCTGGGTCGGCTGGTGGACTTGATGGGCCTGATCG GATTTTTGTGGGTGGACTTCCTTATTACTTCACTGAAACACAGATCAGGGAGCTTTTAGAGACATTTGGTCCTCTAAGGGGTTTTGATTTGGTGAAAGAC AGAGAAACTGGAAACTCGAAGGGCTATGCATTTTGTGTTTACCAAGACCTCGCAGTTACAGATATTGCATGTGCAGCTCTCAATGGAATAAAAATGGGAG ATAAGACTCTGACTGTTAGACGAGCTAATCAAGGTTCAAACCTGGTGCAGCCTAAACCTGAGCAAGAGAGCATTTTAATGCACGCACAGCAGCAGATTGC CCTGCAGGTTGAAGGGATTGTCACTTCAAATTTATTTGCCTAGATCTGTTGTGCATGTGTTTAACAGTCTAATTGCTATATACTTTGGATTTCTGTAGAA ACTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTTTGCTTAACTCATGCAGTTGCTGCTGATGAACTCAAAGATGATGAGGACTACGAAGAGATT CTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTAATTTCTGATTTAGTTTGCTTGTCTTCCACTACAAGTTATAAGAAATTGATTTCAATTTTTTCC TATGCACTTGTTTTACAGCCATTTGTAGTCCCAAATTCTACTGTAACGACTCAAACCTAACTTACAGGCTGAAGCCTCCATAACTCTCCTGTCTTTCAGT TTCCCGACATGAACTTGTTTAATTGCATATTTTTACAACTTATTTGCATATTTCACTTCGCACTGGTTTCCACAATCTGCAGGTACTTTGGTGAATGTGG TGATCCCTCGCCCACGACCAGATGGTGAACTGGCCCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGTTGG ATTGAACGGAAGAAAATTTGGTGGAAATCAAGTTATAGCTGTGTTTTATCCAGAGAACAAATTCGCCCAAGGAGATTATGAAGGCTAGTTGAATTGCTAT GACATTGTATCTTAAAAGATTTCTTCTTACAGGAGCTGCATGCATTTCGTATAATACAGAAACTTATGGATTCTATTTTATTTTATCTGATGGCTGTAAG ATAGTGATTGCGATTATGGAGAATGGGTAGGGATGATGAAAAGGTACCAAATGCAAAACTATGAAGATGTTATGGTAATTTGTTAAAGGGCAAGGATATC TAAACACCTCCCTTACTTTTACTTGCAATCCCAATTAGCCGTAGATATCAAATATCTAAATACTCATGGGTTGAAAATAGATGACAGGCTTAACAAGGGT TGAATTGTGATAACCTATTTTCGAAAACACACTTTTTAAAAAAAAGTAGTTTTTTAACACTCCATATAAG
• Tissue: pods
• Gene name: LI_gene_152244;
• Additional information: details;

Expression of Ll_transcript_499838

FPKM

• PAB: 0
• PNAB: 0
• PS1: 0.8
• PS2: 0
• PS3: 0.1
• PW1: 0.8
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_499838

• Blastp: Splicing factor U2af large subunit A from Nicotiana with 87.22% of identity
• Blastx: Splicing factor U2af large subunit A from Nicotiana with 86.4% of identity
• Eggnog: -
• Kegg: -
• CantataDB: Link to cantataDB annotations (CNT0000929)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440705.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;