| Id Trinity | TRINITY_DN47391_c0_g2_i7 |
|---|---|
| Name Transcript | Ll_transcript_499842 |
| Sequence | AATAAACTACATAAAATAATATTAGAGCGAGGAAATCGCAAAGGAGTGTGACAAAGCTGTAGTGAGTGAGAGAAAGAGAACACAGAGAGTGAAGCAATGG CCGAGTACGAAGAGATATACGAAGAGAACGGAGAAGAGAAGGACCATCACAATTCTCACGCCCATTCCGATTTTTCTCCGCCTCCGAACGCTGATCTCAC TGAATCCAAATCTCACTACGGATCTCGTGATTATGGTAGAGAATCTTCCAGAAGCAGAGAAAGGGAACGAGAGAAAGGGAGAGAAAAGGAGAGAAAAAGA GATAAGGGGAGGGACAGGGATAGAGAGAGAAGCGGAGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAAGGACATGGATA GAGAGAAAAGCAGAGATACGGAGAGAAGCAGGGACAGGTATAGAGAGGGAAGCAGAGAGAGGGAACAAGATCAGGATGGAGAGAATGAAAGAGACCGTGA CAGGGACCACCATCGTAGAGATCGGCACAGGGATCATAGTGAGAGAAGGGAAAGGGGAAGAGATAGAGATGACGATGATTATTACAGAATCCGTGACTAT GATAGACGAAGAGATTACGACAGAGAGGATAGGCATAGGCGCAGGTCCCGGTCTCGATCTACTTCAATGTCAAGGCGTAGATCTGAGCATAGATCAAGAT CTCGTTCTCGTTCACGTTCAAAAAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCAGCACTGTTAGCTGGTGCTTCTGCTGTTACAGGTCA GATGATTGCGACAAATGCTGCAATTCCTGGAGTGTTTCAAAATATGTTTCCATTGGCTACAAGTCAGGTGCAGCCATTCAGTGCTCTCCCTGTCATGCCA GTGCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCCAATGAGCAGTCAGTTGCTACTTTCTTCA GTCAAGTTATGGCTAACATTGGAGGGAACACTGCCGGCCCAGGTGATGCCGTGGTCAATGTTTACATTAACCATGACAAGAAGTTTGCCTTTGTAGAGAT GAGGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTAGATGGTATTATTTTTGAGGGGGCACCTGTTAAGGTTAGGAGACCTACTGATTATAATCCTTCT CTAGCTGCTACCTTAGGCCCAAGCCAACCTAACCCAAATCTTAACCTGGGTGCTGTTGGCTTGACACCTGGGTCGGCTGGTGGACTTGATGGGCCTGATC GGATTTTTGTGGGTGGACTTCCTTATTACTTCACTGAAACACAGATCAGGGAGCTTTTAGAGACATTTGGTCCTCTAAGGGGTTTTGATTTGGTGAAAGA CAGAGAAACTGGAAACTCGAAGGGCTATGCATTTTGTGTTTACCAAGACCTCGCAGTTACAGATATTGCATGTGCAGCTCTCAATGGAATAAAAATGGGA GATAAGACTCTGACTGTTAGACGAGCTAATCAAGGTTCAAACCTGGTGCAGCCTAAACCTGAGCAAGAGAGCATTTTAATGCACGCACAGCAGCAGATTG CCCTGCAGGTTGAAGGGATTGTCACTTCAAATTTATTTGCCTAGATCTGTTGTGCATGTGTTTAACAGTCTAATTGCTATATACTTTGGATTTCTGTAGA AACTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTTTGCTTAACTCATGCAGTTGCTGCTGATGAACTCAAAGATGATGAGGACTACGAAGAGAT TCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTAATTTCTGATTTAGTTTGCTTGTCTTCCACTACAAGTTATAAGAAATTGATTTCAATTTTTTC CTATGCACTTGTTTTACAGCCATTTGTAGTCCCAAATTCTACTGTAACGACTCAAACCTAACTTACAGGCTGAAGCCTCCATAACTCTCCTGTCTTTCAG TTTCCCGACATGAACTTGTTTAATTGCATATTTTTACAACTTATTTGCATATTTCACTTCGCACTGGTTTCCACAATCTGCAGGTACTTTGGTGAATGTG GTGATCCCTCGCCCACGACCAGATGGTGAACTGGCCCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGTTG GATTGAACGGAAGAAAATTTGGTGGAAATCAAGTTATAGCTGTGTTTTATCCAGAGAACAAATTCGCCCAAGGAGATTATGAAGGCTAGTTGAATTGCTA TGACATTGTATCTTAAAAGATTTCTTCTTACAGGAGCTGCATGCATTTCGTATAATACAGAAACTTATGGATTCTATTTTATTTTATCTGATGGCTGTAA GATAGTGATTGCGATTATGGAGAATGGGTAGGGATGATGAAAAGGTACCAAATGCAAAACTATGAAGATGTTATGGTAATTTGTTAAAGGGCAAGGATAT CTAAACACCTCCCTTACTTTTACTTGCAATCCCAATTAGCCGTAGATATCAAATATCTAAATACTCATGGGTTGAAAATAGATGACAGGCTTAACAAGGG TTGAATTGTGATAACCTATTTTCGAAAACACACTTTTTAAAAAAAAGTAGTTTTTTAACACTCCATATAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_152244; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_499842
| Blastp | Splicing factor U2af large subunit A from Arabidopsis with 70.33% of identity |
|---|---|
| Blastx | Splicing factor U2af large subunit B from Nicotiana with 84.88% of identity |
| Eggnog | splicing factor (U2AF)(ENOG410XP92) |
| Kegg | Link to kegg annotations (AT4G36690) |
| CantataDB | Link to cantataDB annotations (CNT0000929) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440703.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |