| Id Trinity | TRINITY_DN47391_c0_g2_i8 |
|---|---|
| Name Transcript | Ll_transcript_499843 |
| Sequence | AATAAACTACATAAAATAATATTAGAGCGAGGAAATCGCAAAGGAGTGTGACAAAGCTGTAGTGAGTGAGAGAAAGAGAACACAGAGAGTGAAGCAATGG CCGAGTACGAAGAGATATACGAAGAGAACGGAGAAGAGAAGGACCATCACAATTCTCACGCCCATTCCGATTTTTCTCCGCCTCCGAACGCTGATCTCAC TGAATCCAAATCTCACTACGGATCTCGTGATTATGGTAGAGAATCTTCCAGAAGCAGAGAAAGGGAACGAGAGAAAGGGAGAGAAAAGGAGAGAAAAAGA GATAAGGGGAGGGACAGGGATAGAGAGAGAAGCGGAGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAGGGATAGGGAGAGAAGCAAGGACATGGATA GAGAGAAAAGCAGAGATACGGAGAGAAGCAGGGACAGGTATAGAGAGGGAAGCAGAGAGAGGGAACAAGATCAGGATGGAGAGAATGAAAGAGACCGTGA CAGGGACCACCATCGTAGAGATCGGCACAGGGATCATAGTGAGAGAAGGGAAAGGGGAAGAGATAGAGATGACGATGATTATTACAGAATCCGTGACTAT GATAGACGAAGAGATTACGACAGAGAGGATAGGCATAGGCGCAGGTCCCGGTCTCGATCTACTTCAATGTCAAGGCGTAGATCTGAGCATAGATCAAGAT CTCGTTCTCGTTCACGTTCAAAAAGGTAAGTCATGGGAAGATCCTTAGCATCAAGTGTATAAAAATGAATGGCTACATGTTGCTTGTGACTGTCATTTTG GAAAATCCTAATTTCTGTTTCATCATAAAATAAAATAGTTGGCACATGTGCAAGTGAAACTAGTGTAATGATGTTGTGAATGGCTGTCAATTAGAGAAAT AGTTAATATAGTTGAAAAGCTGTTTTATTTCAGATCTTATTTCCAATACTTCCTTCATAATTTTAGTTTGAGAGAAAATATACAATTATATTTCTTGGCT GAAATATTGTTTATGACCACATACTGTGTATTGATTACTACATTAAAATCTCTCCTTTTGAATTGTGTTAGATCATTAGATGCGGTTTTGTTTTACTTTG TCTTTTTTCTATTGTTTTGCTCTTTCACGTCCCTTTAGAGTTTAGATATGGTCGAATCTCAAATCCTCAATGTTTCCTCTTACTTTGAATTTATGAAAAT ATTTGTATACACTTACATATATATTCTATATGAGTATTTTAATTATTATTTTCATAATATCTTTAGTTCATTTTGCTACTGATAATTTTATAGATAGAAT TATTAGTGGATAGTTATACCCAGATGTAGACAGAAGATTCAAATACAGAATTACAGATTGATTGTATCTATATTTGGAAAAAACACCATAATTGGCTGTG AAACGATTTTGTAATGTATTACACAATAATGGTGCTAATTGTAACATTAGAAACCAGTTGGAAGTTCCGTGTTAATTGACCATTTATTGTTGGAGGTTAT AGATTTTCCCTGCAATTTGTAGTTTTCAAATGCTATTTATTAATTGCTATTGTCAGAGCCACATATATATTATGTCAACATTATAGTTTTACTGTGGATG ATGAGCTTGGTCCAACAGTGAGGTTGATGCTTAGTGACCATGAGATCATGGGTTCAAGTCTGGAAACACCCTCTCGGCTTGCGGGGGTAGAGCTGTGTGC GTCTACCTTTCCCATACCCCACTGAGAATCTCGTGTACCGGACCACCCTTTTATTATAGTTTTACTGCATTCAAATCCTGTTAAAATACAGTTATTTTCA GTGACTTCGTACCCATTAATATGTTTCTCCCACATGATTTTTTTTTGTTAATTGAAAATACCACTAATGTAAATGTGCTACAAATCTTAAGTTCATATTT TATATATTTCAATATTCTGAATAGAATTTATCCACCTATTGTAAAATGTTTCTTGGCATGAAAGGTCACATGTATTATTGGAATACTAAATTCATTTACT TACAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTTCAGCACTGTTAGCTGGTGCTTCTGCTGTTACAGGTACATTTACTCTCATATATCATG CATCTGATTTTTTAATCTTAACTGCTTTGTTCCTTTTGTTCTAGTATGGAAAATTCATATCAAATTGCATGGTGCTTACTTGGTAAGAAATGTTCTGTTA TTATATGAATATATAGCTCCTTGAAGACTGGTTTCCCATGCTCTGTAATTGTCTTTCTTTTAACTTTTGATTTAATTCTGGAACTAAAAGATGCTTTGGT TTTTGTCTTGTGTTTGGTGTTTCTTTTGTTTTTGTCTTGTCTTATGTTCTAAGAAGGCAATGTTGGGCTACTAGCCCCAATGTGCTGACAATGGCCTGAG CCGACATTTGTAGCTTTATTGTCCACGGAGGAATGAATGCACCAGTTTTTGGTGGGTCTGGTTCGTCTACATCTGGAAACTGTTGGCCACTTTGGTCAGA TGATTGCGACAAATGCTGCAATTCCTGGAGTGTTTCAAAATATGTTTCCATTGGCTACAAGTCAGGTGCAGCCATTCAGTGCTCTCCCTGTCATGCCAGT GCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGGGTGTATGTTGGGGGCCTCTCTCCTACAGCCAATGAGCAGTCAGTTGCTACTTTCTTCAGT CAAGTTATGGCTAACATTGGAGGGAACACTGCCGGCCCAGGTGATGCCGTGGTCAATGTTTACATTAACCATGACAAGAAGTTTGCCTTTGTAGAGATGA GGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTAGATGGTATTATTTTTGAGGGGGCACCTGTTAAGGTTAGGAGACCTACTGATTATAATCCTTCTCT AGCTGCTACCTTAGGCCCAAGCCAACCTAACCCAAATCTTAACCTGGGTGCTGTTGGCTTGACACCTGGGTCGGCTGGTGGACTTGATGGGCCTGATCGG ATTTTTGTGGGTGGACTTCCTTATTACTTCACTGAAACACAGATCAGGGAGCTTTTAGAGACATTTGGTCCTCTAAGGGGTTTTGATTTGGTGAAAGACA GAGAAACTGGAAACTCGAAGGGCTATGCATTTTGTGTTTACCAAGACCTCGCAGTTACAGATATTGCATGTGCAGCTCTCAATGGAATAAAAATGGGAGA TAAGACTCTGACTGTTAGACGAGCTAATCAAGGTTCAAACCTGGTGCAGCCTAAACCTGAGCAAGAGAGCATTTTAATGCACGCACAGCAGCAGATTGCC CTGCAGGTTGAAGGGATTGTCACTTCAAATTTATTTGCCTAGATCTGTTGTGCATGTGTTTAACAGTCTAATTGCTATATACTTTGGATTTCTGTAGAAA CTTATGTTACAACCAGCATTAGTGGCAACAAAGGTGGTTTGCTTAACTCATGCAGTTGCTGCTGATGAACTCAAAGATGATGAGGACTACGAAGAGATTC TTGATGATATGAGACAGGAGTGCTCCAAATTTGGTAATTTCTGATTTAGTTTGCTTGTCTTCCACTACAAGTTATAAGAAATTGATTTCAATTTTTTCCT ATGCACTTGTTTTACAGCCATTTGTAGTCCCAAATTCTACTGTAACGACTCAAACCTAACTTACAGGCTGAAGCCTCCATAACTCTCCTGTCTTTCAGTT TCCCGACATGAACTTGTTTAATTGCATATTTTTACAACTTATTTGCATATTTCACTTCGCACTGGTTTCCACAATCTGCAGGTACTTTGGTGAATGTGGT GATCCCTCGCCCACGACCAGATGGTGAACTGGCCCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGTTGGA TTGAACGGAAGAAAATTTGGTGGAAATCAAGTTATAGCTGTGTTTTATCCAGAGAACAAATTCGCCCAAGGAGATTATGAAGGCTAGTTGAATTGCTATG ACATTGTATCTTAAAAGATTTCTTCTTACAGGAGCTGCATGCATTTCGTATAATACAGAAACTTATGGATTCTATTTTATTTTATCTGATGGCTGTAAGA TAGTGATTGCGATTATGGAGAATGGGTAGGGATGATGAAAAGGTACCAAATGCAAAACTATGAAGATGTTATGGTAATTTGTTAAAGGGCAAGGATATCT AAACACCTCCCTTACTTTTACTTGCAATCCCAATTAGCCGTAGATATCAAATATCTAAATACTCATGGGTTGAAAATAGATGACAGGCTTAACAAGGGTT GAATTGTGATAACCTATTTTCGAAAACACACTTTTTAAAAAAAAGTAGTTTTTTAACACTCCATATAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_152244; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_499843
| Blastp | Splicing factor U2af large subunit A from Nicotiana with 86.35% of identity |
|---|---|
| Blastx | Splicing factor U2af large subunit A from Nicotiana with 86.35% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0000929) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440705.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |