| Id Trinity | TRINITY_DN47407_c6_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_476250 |
| Sequence | ATCAAATTGTTATGTTGTAATATAGTTACAAGGCAAGGGAGAAAACAGACCAAAATCTTGCAATGCTGTACCTATACTTCTCACCCGTTTCAAAATTTTC AACATGTGACTCCCGAAGCAACCACTACACAGGGATCTGGTGTAACAGCAGTGGCCGATGATCCAACTCGCAGCGGTTCTGTGCTGATCCAACTCGTTGT CATTGTTGAGGGTATGACTATAGGTTCTATGGTAGCAAAATTCCTTGTCGGGTAAGTTTCGTTTGCAGCAATATTTTAACATATAATATAATCTACAAGC CAATTAGCTTGATTCAACTAGCATGGAGAATGCAGTGTGTGGGTGGATCCAATCCTCCGTCTTACGTTTGGGATTTGAGGAAGAAGGAAGCCACTTATGT ATGGTAAAATGGTCAATCAAATCACCCAATTGCATATGACTAATTGAGTGGTTTTTTTACATGTATGAAATCATTTTCTTCTTGACTTGGACCTAGTTTG CATAGGATGAGTAGATGCAATAGGAACAGAGTCTCTAATTGTGGAAGATGACCTAGGATCAGAACAGGATGTAGAAGTAGGTGACAGTTGTATTAGGAGG AGACTCATTTTCTAGATTTGTATTTGAGGGAGAAGAGGACTGATTGATGTTTGACTCACTGATATTGGACTCATTAATGTTTGACTCATTGACATTGGAC TCATTTGTGTTTGAGATAAGTGAGAACTCATTTATATTTGACTTATTTGTGTTTGAGATAGGTGAGGACTCATTAGACCTAGAATTTCTGTGATGAGAAG TGCTTGCTGTATTAGGAAAAGTCATATGATGACCATGAGGAGAAGGATCATGAAATTGCATAGTACGGTCAGAGGTGGTTGAAGTAGGAGAGTGTGAGTG CAATGTAGCATAGGGGAATTTATACTCATTAAACACTACATCCTTTGAGATGATGATTTTACCCTCAGTGGTTAGACACTTATACCCTTTGTGAGAAAGG GAATACCCCAAAAAAGTGCATTCTGAAGACCTATATTCCAATTTATGTGAGTTAAAGGGTCTAAGATTAGGGAAGCATGAGCAACCAAAGACCCTTAAAC TGAGGTAATCTGGACTAGTCTGAAACAGAAGATTATGAGGAGACTTGTTAGCCAATGTTGGGGAAGGTAGTCTGTTTATAAGATAAACAGTTGTGAGAAA GGCATGGTCCCAAAATTTTAAGAAGACAACTGTGAGCAAGTAAAGCTAGGCCAGTTTCAACTATATGCCTATGCTTTCTCTCCACAGTTCCATTTTGATG GTGAGCATGGGGACAGGACACTCTGTGAGTGATTCCTAATTTGGTCAAATAGTTGGTGAATGGCCTAAACTCACCACCACAATCACTCTGAACTGACTTA ACAGTGGTACTAAATTGAGTTTTGACCATAGTAAGAAAGTTATCAAATAGAGTGATTGTGTCAGATTTGAGTTTTAGTAAATAAACTCAGGTGTGTCTAG TAGCTGCATCAACCAAAGAGAAATAATACCTAAATCCAGTTATGGAATCAATAGGAGCAGGTCCCCATAGATCCATATAAAGAAGATCAAAAGGATTAGA ATAGGTATTAGTGGAGTTGGCAACATGTAATCTATGAGATTTTCCTAAACAGCAAGCAAAACAGAAATCCAAAACACTTTTATTGCATTGAGAAATATTA CAAGAAAGCAAAATATTGGAAACAACTTTATCATTGGCATGTCCTAACCTACAATGCCAAAGAAAATAGCTAGAAACATTGCTAGTACTATTGTAAACAA GTTTATTTGTAGAAAGGGGAAAACTAGGAGTGTGGTGACTAGATGGATGCTGTGAAGGTGAAGAGGTGACAAAACTTGAGGTTGTTGAAGGCTTGAGATC ATGAAAAGCATAGAGGCCCTATGATGTGAGAGATCCTCTTAGCAGAACCTGATCAGTAGCCTGAGATTTAGCACAACAAGAGTTAGGATGAAACTCAAAA TAGCATGAATTATCACGAGCAAACTGAGATACACTAAGTAAGTTCTTAGTAATAGAAAGAACAAGTAACAGGTTTTTAAGAGACAAAGACATGTGAGGAT TAAACAGAGAGTGAAACTTAGAATTTCCACAAGCAGAGATAGGGATGCTAGAGCCATTACCCATGTATATTTGGTCTGTGGTGAACCTTTCAGTTGGCTC TTGAAGAAGAGCAGGATCAGCAGTCAAGTGATTGGTAGCACCAGAATCAGGATACCAAATAGAGGGAGAGACTTGAGATCCAGAGGCTCCACCGTTTGCT GAAGCTGTCATAGCATAAGGAGCACCATAATGACCATTGTTGAACCCTGAAGTAGGAGGCAAGGATAACTGAGCATTGTTACCATAGTGATGATAGTCAT ATGAGCCCCGAGGTTGAGGAAATCGTGGTCCAGAAGGATGACCAAAGTTCCTAGAGCTTTGAGTGTAGTAATTAGGATGTTGTTTGCTTATGGAAGGATA ATGACGAGGTGGTGAGTGAAAACCAGAGGGATGGCCATAAGGAAGATCAGAAGCATGAACAAAAGGTGCATAGTAACAGTAGGAAATGTCATGACCATAT TTGTTGCAATAATCGCAGAAGAAAGAGTTACCTCTTGGTCTGAACCACCACGAGCACCAAACCTACCTTTACCTCTATTGCCACCACGAAAATTTCCTCG AAATGCTGCTGGAGGTCCATAAGATGGAGCAAGAAGTCCTTCATTGCGTCCCCTAGGAAGAGAAGGAGAAATAGGAGACCTAACAGAGTAGTGTTGAGCA TGAGAATTGATGGATGAAGGACTGGAAGGAGAAGCTGCAACTATGTTGACAGATAGAGCATCAGAAATAGACTTAGTGCGATTGCGTTCAAGACGAGCTT CGAAGGTGAGAAGATAGGACTGAAGATAATTGATCGTCGATATTTCCTCTTGACTTTCAACAGTAGTAATCAAATTGTGAAATTCTTCAGGTAATCCATC GAGAATGCAATCGATATGCTCTGCTAGGGTTATAGGAGAATCAATCGAGATTAGAGAATCAACAATTCCTTTGATTTTCATGATATACTCAGAAATTGTG CTTGACCCCTTC BLAST |
| Tissue | pods |
| Gene name | LI_gene_152354; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_476250
| Blastp | - |
|---|---|
| Blastx | Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 32.99% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019430753.1) |
| Pfam | gag-polypeptide of LTR copia-type (PF14223.5) |
| Rfam | - |
| GO | - |