Id Trinity | TRINITY_DN47424_c0_g1_i15 |
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Name Transcript | Ll_transcript_476470 |
Sequence | GAAAATGCCACTTGATAGGTATATACAAAGATCCCGTTGCAAAATTGAATTGGCCCGATTCGAAATCCAAAGATAGTTGATGCGTTTTAGGTTTTTGGTT CACAAATTTTTCTAAATTCCATGGATGGCAACAATTTATCTTCCGATCAAGTCATTGCAGAAATGCTTGATATGGGTTTTGAGCATTCGAACATTGTTGA AGCCATAAAAGTTGTGGGCCCATCCATTACCAGTGTTGTTGATCATATCTTGAATGGTGCTAGTGTTGTAAGTAGAACTAACTGTGAAGCATCATCATCC ACTAGTACTGCTATCAAGTCTAAAGTTCATGCAAATAATGGGGAAGTTTTGAAAAAGAGAACTTTGCTGCCGTCCGGTCAAGTTCGACAATCGAGGATAC TCGATCATTTCCAACCCACCAATGGTAAAGTCAAAGAGAGCACGAAGAGTCATGTAGCTGTTGATGCAGTTGGCAATGTGGAAGAGCATAAGGAGCCTTT CTCCGAAGTGGTTGTTGATCCCTGTGTGATGTCGGGGTCAGTTGTAGCGGATTCTGAGGATGATTTGGATATTACATATGATTGGGAGAAGAAAGCTGGA ACTATCTTACAAAAGCATTTTGGTTTTTCATCATTGAAGAGTTTTCAAAAGAAGGCCTTGAATGCTTGGTTTGCACATAAAGACTGTCTTGTCCTGGCTG CAACAGGATCTGGGAAATCTCTATGCTTTCAGCTTCCTGCATTACTAACCGGGAAAGTGGTGGTTGTGATTTCGCCCTTAATAAGCCTGATGCATGATCA GTGCTTAAAGCTAGCAAGACATGGAATCAGTGCTTGCTTTCTCGGGTCTGGGCAACCTGACAATACTGTTGAACAGAAAGCTATGAAAGGCATGTATAGT ATAATTTATGTTTGCCCGGAGACCATCCTGAGATTGATTACACCACTGCAGGAGCTTGCAGAAAGTCGTGGTATTGCTTTATTCGCAATTGATGAGGTAC ATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGACTACAGCCGTCTGTCTATGCTGAGGGAAAAATTTAATACCAGCAAGATGAAGTCCCTGAAATT TGATATACCTCTGATGGCCTTGACTGCCACAGCTACAAAGAAAGTTCGAGAAGATATTTTGAAGTCATTGTGCTTGTCAAAAGATACTAATGTTGTACTC ACCTCATTTTTTCGATCTAATTTACGCTTCACGGTAAAGCATACTAGATTGTCACAGGCTTCGTATGACAAAGATTTTCATGAATTGGTTGAAATATATG GTAGAAAGCAATATACTGATGAAAATAAAAGAGGTCTCATCTCAAAGGATTCAGATAATGTTTCCAACTCTGACACAGACGGTGATTCTCCTTATAATAA GGATGACAACGAAGACGACTATGCTGATAGAGATATTAATGTAATAGACTCAGGAAACAGGGAAAATATTAGAAAGGGTAAAGAATTGTCAGTTGAGTTC CTTGAAAATGACATTGATGACTTTCAAAGTGTTGATGACTGGGATGTTACCTGCGGTGAATTTTGTGCACAGCCTCCTCCCAATGAATGGGAGTCATCTG AGATAATTAATCCACCCAAGAAACCAGGAGGAAGACTTAGAATTCTTAAAGAACCTGTGCAAAAAGGACCGACAATCATATATGTACCCACCAGAAAAGA AACAGTGAAAATTGCAAATTATCTATGCAAGTTTGGCGTGAAGGCTGCGGCTTATAATGCAGGGGTATGGGGTATATATCATACTCAAACTTGTTTAATT AGATGTCAATTGCAGAAGAATCATTTCCAATGGATGTCTTCTCCAGGAAGAACAAGAATTTAAATTTTATGATTTCTTATTCATCTTTCTTATTTACATT TAAGTTATTATGCTATAAATAATGCCATATGTGGATTTCATTGAGCAAAGCTGGGTAGTTAGTTTTGCACTTGTCTTCAATTTTCTTGCTCGTTCTCCTG CACCTTTTGAATTATGTTCATTGTTAGCTACTAAACTGATTTATGAGCCCAATTTCTTTCTCCAGCTTCCAAAATCACATCTTAGAAGGGTTCATAAGGA GTTTCATCAAAATAATTTAGAGGTATGGATCATGAGCCTGACTTCAATTTTTCCAACCTCACTACTCTCCCTTTCACTCTCTCTCTCTCCTCTAAAAAAG AGGGACAAACATTTTATATTGCCATTGCCCATTATCAGTTATGTTATGTTATCATCTACTTTGATGTGCTAGCGTTGGATTCATTTAAGCTGTAGGTATT ATTTAGAACTATTTATAACTGTGATTTTTTTTCTCTTCACTATTATTATGAAAATCCATGATCAACTGCATGGAACTCTATCTTTAAAAGGAGTTGAGTA ATTCTCTTTTACTATTTTCATCTTATTTTGATGGCTTTCTGTGCTTGATGCTTGTTTTCATGTAGAAACTCTTTTCCTCTTCTAATGTATCTCTATGTTT GTTTGGTCCCTTTTTAAGAGTCTTTTAACAATATTAGCTATTTGAAATCTTGCCCAGCCTGTCATGCATCTAAGCATGGCTTTTTCTTTGTGAGTTGGAA TTATTTTGTTATTATTGCTTAAGTTTTCATCTTATGTGGCAGAAAAATATAACAAGAGTCAAATCCTTTAAAGCTTTGTGATATTAAGACCTTTTATCTA AAGTTTCTTTACCCTTGTTCGTCCCTATTTTACTTGTGTAGTATACTGCATAATGACAATTATTTTTTTCATCATAGAACCATAAAAAGGTTTGTCAAAT GCCAGGTTTTACATTTGTGTTTTATCATTTTCAGGCTGTTGTTGCAACAATTGCATTTGGAATGGGAATTGACAAACCGAATGTTAGAAGAATCATCCAC TATGGTTGGCCGCAGAGTTTGGAAGCCTACTACCAAGAAGCTGGCCGGGCTGGTCGAGATGGAAAATTAGCTGATTGCAGTAAGTTTAATATGTAATTTG CAGTAACTTTGGAAAATTAGCTGATTGCAGTAATTGAATATGTAATTTGCTGATTGTTTATTCTTACTTCTTCACCATTTAAATCTTGTATCAAAACTAT TGTACCCCCAATTTTACCAGTTCTATACACAAACCTAGCAAGAATGCCATCACTTTTGCCAAGTAGAAGAAGTGAAGATCAAACAAAACAAGCATATATC ATGTTATCTGATTGTTTCAGGTGCGTTAATGAATATATCCTTGCATATCTTTTTCTCTTTTTTTATTGTATTACAGAATCTTAATCTATATTTGCAGATA TGGAATGAATACTTCATGCTGTCGAGCTAAGATACTTGTCGAGTACTTTGGAGAGAATTTTGGTTCTCAGAAGTGTCAGTTATGTGATGTGTGTGTTGAT GGACCGCCTGAAAGGCAGAATTTGAAAGAGGAGGCGAGTATTTTACTACAAACTATAGCTGCCGAATATGTAAGTTGAATGCTTCCGATTTTATACTGAA AAAACTTATTAATTCTGTTATACATGTGAATTTATATTAACATTTTGACTCTGGATTGTCGCAGCATATTTTAGATATGTGTGCCTCATTCTCCTCCATG TGTATTCTGCACGTGTCTATTTCTCTAGATTAGACTTCAATATGATAAATTGGTTAACCAAATGCATTGTTTTGTGGAGTTTCTGGATCAACTGTAGTCT TAAGAGCTCAAGTTCTATCCAACCTATACCCTGGCTCTGAAGCATGATAAATGTGAAACAGTCATGCTCCTATGATTGTACTTTCGACATTCTGTAAGAC GAAAGAAACTAATGCAACATGGATGTTGGTTTTTCAGGCACGCAACTATTCCATGGGTGACCCATATGATGACAGTATACATTTTGATTTGGAAGATAGA AGAAGATTTGGAGAGAGATCAAATCTTACGATGTTTGTTGGAAAGATAAATGAGCAGTCTCCAAAGTTTTTAACCACTGCTATATTATGGTGGAGAGGTC TTGCTCGAATTTTGGAAGTTAAAGGATACATTAGGGAGGGAGATGAGAAG BLAST |
Tissue | pods |
Gene name | LI_gene_152475; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_476470
Blastp | ATP-dependent DNA helicase Q-like SIM from Arabidopsis with 51.44% of identity |
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Blastx | ATP-dependent DNA helicase Q-like SIM from Arabidopsis with 51.26% of identity |
Eggnog | atp-dependent dna helicase(COG0514) |
Kegg | Link to kegg annotations (AT5G27680) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019452258.1) |
Pfam | DEAD/DEAH box helicase (PF00270.28) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |