| Id Trinity | TRINITY_DN47428_c3_g6_i1 |
|---|---|
| Name Transcript | Ll_transcript_476484 |
| Sequence | CACGGAAAAGTTTCTTTATAATTCACGCTCTCAAGTTCCAAGTCCCACCTTCAACAACTAAACTAGTAACTTCATTTCACACTTCTCCTTAATATGAACA CTGATGCGCAATCCGAAACGCTGTCGTATTGGTGCTACAACTGCACCCGCTACGTTCACCTTGTTAACCACAACAACATCGCTTGTCCTCACTGCGAAAC CGGTTTCATCGAACGGATCCAACCCGATCCATCACTGAATCACCCTCTCACTCCTTTCCCCGACGAGTCAACGTTGACCACACGATCCTCCCGCCGGAGA CACCTTAACGTCACCATCCAATCGCCGATCAACCCCGTCATCGTTCTCCGCTCACATGGACACCACGGCGCTGACCACGACGGTAGCGTCTTCGAATTGT TCAACGACGACGGCAACGGTCTCCGTCCCTTGCCGACTCCTATGTCTGAGTTCTTGTTAGGATCTGGAATCAATAGCTTGTTACAGCAGTTTTCCGAGGT CGAGGTGAACGGGTTTGATAGGGCGGAGAATCCGCCGGCGTCAAAGGCAGCGATCGAATTGATTCCGACGATCGAGATCGAAGAAACGCACATAAGCACC GATTCACACTGTGCGATTTGCAAAGAAGCGTTCCAGCTTGGTTCCGAGGCGCGTGAGTTACCGTGCAAGCATATTTACCACTCCGATTGCATTCTTCCAT GGCTATCGTTGCGAAACTCATGTCCTGTGTGCCGCAGCGAGCTTCCTTCGGTTCAGAATCCTCCAGTTTCCAGTCAAATCGATGAAGAATCGACCGGGTT CACGGTTTGGAGGTTACCAGGCGGTGGAATCGCCGTCGGTAGGTTTTCCGGTAACCGGAGAACCAGCGAAAATCAGTTTCCGGCAGTGTACACCGAAATG GACGGTGCAATGAATAATAGAAGTGGAACTTCGACCAGTATTTGGCGTACACCGAGAAGGAATAGGGTTAGAGAAAGTGGTATTGTTCGTAGGGCTTTTC GTAATTTCGTATCATTCTTTGGTTTTAGCTCTTCATCTCAGAGAAGAAGACGTAGCCCAATGAGTTCTGCGTTGAATAGGAGACGAAGCAGGACATTTGT GATAGAAGTTTAGTTCATTTATTATTTCGCTTTTTTGTTGTTAAAGAAAGCATACATGAAAACATTAATTCTGTAAATAGCATGTCATTCGCAACTTGTA ATGATAATAAAATGCATATATTGCTTTCAGTTAAAATTATTAAATAGTCAGTCTATAAGCTGTGGTTTGCTACTTCTTCAGAAATGTTCAATGGTTTCAG AAAAGTTTTTTTTGATCAACAATAATTATGAATAGATTAACAAAAAAATAATTAGGAGAACAAGTGATATTCCTATCCATACAGACTTACAACCAATCAA GTAAGACAACTAGAAGGGTTTGAAGCCCATTCCAAAAAAGAAGAAGAAAAAGAAGAGAAACGAGCTGAAAGTATATTCCAAGAAAGAAGTTGAATGAAGA AAAATACCTCGTCCACATTACAGCGAGACAGCTCAAAGATGATTTTATTTCTAGCCGACCAAATAGTCCAAATACAAACAAACCAAATAACCATCCACTT ATTATGAAACTTTTTGTCCAAGCACATGAGATTCCAATGGGAAATAAAGTTGCACTTGACACCAATTGAGATAACACAATAAAGGCCAAACCAGGAATAA ACTTTTTGCCATACACCGTAAGATAGAGAGCGGGAAAAGAACAAATGATCAACTGATTCTTCTATCAAACAACAAAAAACACAATTCGTTGAAACATGAT CTCCAAGTACCCCACGTCTATCTGAAAAGTGAGAAGAGAAGTAGATGTTGTGAGAAAAATATAATATTATAGGATCCAAATAAAAATAAAAATGTTATTT ATTACTGTGAAGAAAAATATATATTATTTTAATTCTATGGAGAATTATAATAAATTATAAAATAATCTATGTAGCCCAAATAAGAATGAAAATTTTATTC TCCATCAAAATACTCâBLAST |
| Tissue | pods |
| Gene name | LI_gene_152510; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_476484
| Blastp | E3 ubiquitin-protein ligase RDUF2 from Arabidopsis with 46.45% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase RDUF2 from Arabidopsis with 46.1% of identity |
| Eggnog | zinc ion binding(ENOG41121N2) |
| Kegg | Link to kegg annotations (AT5G59550) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019454083.1) |
| Pfam | zinc-ribbon (PF14369.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |