| Id Trinity | TRINITY_DN47436_c5_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_476626 |
| Sequence | TGTGAATCATTTTGTGATTAAAAAATATTTTTAAATTTGATGTGGCCCAAATGGGGTCTGATGCGGCTTAAATGCAGTTCCATGTGACTGCATGAATGCA TCCTTATGATTCAGTGTCACACTGCAATTACGGCAGTCACCGCAACTGCAAATATCGTGGCTGCATCACGTGATATGGTCCACAATTTGAATCACTACTT GAAATATAAAAAATTCTTAATCCTTGTGTTCTTTATAGTTGGAATTATTTAGTGTTCCCTGCATCAGTATGGAGCTAGATTCCTTTGCTTTAAGCTTAAT TAGGCTACAATAATTTCAACATGCTTGCTAGGTTTAAATCAAAGTGTTGTTTTTAACTTTTTATCTATAAATGACTGCAGTTTCTTGTATTTTAGGTAAT TGTGGCTGACGAGGATAACAGGAAATTGATCTTCTCTGAAAAGGAAGCTGCCTGGTCTAAATTCTCTGGACGGGTCAAGGTTGGAGACATTTTTGAAGCA AGAGTTGGCTCTGTTGAGGATTATGGTGCTTTTGTTCATTTGCGCTTCCCCGATGGTCTTTATCGCCTTACTGGACTAGTACACATCTCAGAAGTGTCAT GGGATCTAGTTCATGATGTAAGAGACATCTTAACAGAAGGTGATAAATTGAGGGTTAAAGTTATCAATGTTGATAGAGAAAAATCAAGGATTAAACTGTC AATTAAACAGTTAGAAGAAGATCCACTTCTAGAAACTCTGGACAAAGTAATACCTCAGGATGATTCAGCATATTCTGATTCTTTGAGCGATGATGATAGC AGTGTTATTGAGCCTCTTCCAGGACTTGAGACAATCCTTGAAGAGCTACATAAGGAAGATGGGTATGCTTCCATCCTTATATCTTGTTCTGTAAATTGTA ATGTTCTAGGTAGCAAGAGTTTAACTACTTGAAATAACCCGTGGTTACATCCAAAATCCCTAGCCACATGGTCTAAATAATTCTTTTAATAAAAAGATAA AAATACTACTGCCATGGTTTTAAGTTACAGTTGTGGCCATTATGATTGTGTTCATCGTGATACAGATTGTGGTCGTTTTTGTGGTTCAAAATTTGATTTC AGAATATGATGCGGTCCAAACTGCTCCTACATAGAATGTGAAATATTCCTAACAACTATATGGACTTTTTATTGCATAATGAATAGGAACATAACAGCTT CTGAGTCATACTAATCCAGACATGCTTAGCAAATCTTGTTCTTTTGAAATACCTTTTATAATATATGTGATGATATGAATTGTCTGATAAATTTTCAATG GTGAAATATGTGACAGTATATTTGATGCAAGAATCAGTCGTCAAGGGTTTGAAAAACGTGTTGTCTCACCAGACTTGCAGCTTTGGCTTTCCAATGCACC TCCTTCAAACCAAAGGTTTACTCTCCTTGCTAGAGCTGGAAGACAGGTGCAGGAGATCCACTTAACTACATCCCTTGATCAAGAAGGTATCAAAAGGGCA TTACAAAGAGTATTGGAGCGTGTCCCCTGAATCTCACTCAGGAACAGTTCTTCCAGCTCCATAATATCTCAATGATTTTGTACAGTTATCACACATTTAA AGTTCAGATATGACCCTGCATATTCCATTACATCAAATCATCGTGATTTAACTCTAAAAAAAAGTCCTTATAAGAACACTCCATCAAATAACATTTGCTT GAATTCATTCATTCAAAACAAGTACTATTTTGAATAGATAATGAAGAATCAGCAACACAGGAAACATAAAAACTTATTACATATTGTCCTGAAATGGGTG TTCCCTATCATGTCATATTCATAGATGATATTATTTTCCCTTTAGGATTCGTAATTGTTCATTCAAGCAAGTGTCGTTTTCAGGAATTAAATCATTGATC TTTTGGTTTTTTTGGGGTTTTACATGATTAGATTAATATTTTGTTAGTATATATATATAGATGATATTATCATTGATTAACTTATTAAATAGTTCTTCAA TTAATGCATCTTTCATTAGATGATGCACCATAGTTATTGAATGAATGAGGATCATTGATTTGGATAAACTTTTAAATCAATGATTAGATTAGTATAGGTT ATTCGATAGGCATGTTGAATGTTGTTTATATGGAATTAAGAAGTTTTAATATTCCTGTTTCTTTTTTTATAGCACCATTTTGGATAATTTTATACTAATT AAGAGTTGTAAAAATATGTTTTAAATTTGTAAATGATTGTACCTAGTTTACAAAATTGTCATTATTTTTTTAAGTGTGATGCTTGAAAAAATAAACCTAT TTCAATAATCTCTTTTCAGTGTTGTGATATGATTGAATAACAGTGTTCATTAATCATGATGAATTGGGTCCAATATTAGTTTGATAGAAACTAGTACTTA TTTTTCTTCCTTTTTGTAAAGTGCATCATGTGGCATATGAAAAAAGGTTTGTGGCCAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_152583; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_476626
| Blastp | - |
|---|---|
| Blastx | 30S ribosomal protein S1 from Leuconostoc with 36.54% of identity |
| Eggnog | thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity)(COG0539) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019438287.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |