| Id Trinity | TRINITY_DN47445_c4_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_476017 |
| Sequence | ATTCAATGTTTGGTTGTTGTTATTATATAGCCCCTGCGTGTTTCATTACAAATTCAATAAGGAACACAATAAATGAGAACGACACTGAGAGGGTTTTGAG TTTTGACCTGAGACTTTCTCTTACACTTGCAGCCTCACTGGAACATCGATGGCGGCCTCACACCTCCTTTATCATTCTCCTTCCTTTCCAAAAACCTTAA ATCACTCTTTGAACCAAAACTCTTTCGCCCGAAACCTCGTTCTACCTCTCAAAGCCACCTTTAAACCACTGGTTCTTAGAGCAGTTTTGTGTCAGAGTAA CACTGCTAAACCCCAATTACATGACTCCCAGAGTACCACTAATTTTCAACACTGTTTCACCAAGTCTGAAGATGGGTTTCTGTACTGTGAGGGTGTTAAA GTGCATGAGATTATGGAATCTGTTGATAAAAGACCTTTTTATTTGTACAGTAAGCCTCAGATTACTAGAAATGTCGAGGCCTATAAGGACGCGTTGGAGG GATTGACATCTATAATCGGTTATGCTATCAAGGCCAACAACAATTTGAAGATTCTGGAGCATTTGAGGCACTTGGGTTGTGGTGCTGTGCTTGTAAGTGG GAACGAGCTTAGGCTGGCGCTTCGTGCTGGGTTTGATCCCAAAAGGTGTATCTTTAATGGCAACGGAAAACTCTTGGAGGATCTGGTCTTGGCTGCCCAA GAAGGTGTTTTTATCAACATTGATAGCGAATTTGACCTGGAAAACATTGTAGCGGCTGCAAGAATTGCTGGAAAGAGGGTCAATGTTTTACTTCGAATAA ATCCTGATGTGGATCCACAGGTCCATCATTATGTTGCTACTGGGAATAAGAACTCTAAATTCGGCATTAGAAATGAAAAGCTGCAGTGGTTTCTAGATGC TGTGAAGGAGCATCCTAATGAAATAAAGCTTGTAGGGGCCCACTGCCATCTTGGGTCAACAATTACCAAGGTGGACATTTTCAGGGATGCTGCAACTATT ATGGTTAACTACATTGACCAAATCCGAGCCCAGGGTTTTGAAGTTAATTATTTAAATATTGGTGGTGGACTTGGCATCGATTATCATCATTCTGGTGCTA TCCTTCCTACACCCAGAGATCTCATTGATACTGTGAGGACTACCCCAGATATCTCACTGTGTCTTCCCAATTCTATGTCATTATGCGCTAAGTTTTCAAT TCCTTATAAGACCGAGGCATAGCTATTAACTGATAAATGGGGATTATAAATATTGCAGTGGGTACATTTAAATGCAGCATTTTGTAAGTTGTGACATGCT GGGTCATGTGGAAAACAAGTCCTGTGAGAATTAATACATTTGCATGAATTACATCAATGTATAGTGTTTGTATTTGATGGACTAGATCACTGTCATGTTT TGTAATGCATGTATTGTTGGTGGTCAATTGTACTCCTATGAGTTAACTGATTTGATAAGGGGCTGAGTGAACTTCCATGCCTGAGAATTTCTGTAGGATC ATCTATGGGGTTTGGGTCTCTCTTTAGTCACTTCACTTTTGGCTGATAATGGTTTTGGTGAACACTTGTTATTTGTGATCAGTGAGTAGTTCATATGTGA TATATAATATTCATATACTTGGATTACATGTGTTATTTATTTATTTTTGTTTCACATTTGCTGGAAGAGGTACCTGCATGTTTATTTATGCATATCCTTT AAATCATATAGAGGAACATATTCTGCTTCTTTCTTATAAGTGTCTGTTAATTTCACTGAATTTGGTATGCTCTACTGCAATCTAAATGCTTTCCAATAAG AAAGATGCACTTTTTTTTTCTTGAAGTGTTCCTGCTATTTCTGTATTTGCTAATTCATGGCTGGACTAGGTACGGGAGCTTGTCCTTTCACGTAATCTTA ATCTCATCATTGAACCTGGGAGATCACTCATTGCAAACACGTGTTGCTTAGTTAACCGGGTGACGGGTGTCAAAACTAATGGATCTAAAAACTTCATTGT AATTGATGGAAGCATGGCTGAACTTATTCGCCCTAGTCTTTATGATGCTTACCAGCACATAGAGCTGATTTCCCCTGCCCCAGCAAATGCCGAGGTTGCG AACTTTGATGTGTTTGGCCCTGTCTGTGAGTCTGCAGATTTCTTAGGAAAAGATAGGCAGCTTCCAACACCAGACAAGGGTACTGGTCTGGTTGTTCATG ATGCTGGTGCTTATTGCATGAGCATGGCATCAACTTACAATCTAAAGATGCGGCCTCCTGAGTATTGGGTTGAAGACAATGGAACAGTGAGCAAAATCAG ACATGGGGAGACATTTGAAGACCAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_152668; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_476017
| Blastp | Diaminopimelate decarboxylase 2, chloroplastic from Arabidopsis with 70.86% of identity |
|---|---|
| Blastx | Diaminopimelate decarboxylase 2, chloroplastic from Arabidopsis with 70.86% of identity |
| Eggnog | Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (By similarity)(COG0019) |
| Kegg | Link to kegg annotations (AT5G11880) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019431286.1) |
| Pfam | Pyridoxal-dependent decarboxylase, pyridoxal binding domain (PF02784.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |