| Id Trinity | TRINITY_DN47449_c1_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_475416 |
| Sequence | ATAGAATAGAAAAATAAAAACCTAATTATCAATTATATAAATGATCTAATATATGAATTAAATTGAAGTTTGTTAACATATTATTAGTCTTCCACAACTG TCGTTGGCTCAAGTGTACATGATCCCCTTAAGTAAGGACTCGGGTTCTATCGCCCCACATACTTGTGAATATTTTCGGCTCGAAAAGGATTGCCTCCAGT GCGGCGATAACACACGCGAAAAACCAAAAAAAAAATTTATTAGTCTCCACATAAATATTTCCTTATTATAAGGTGGTAACTAGTTTTACCAAGTGTTTTG CGACATCTGGGTGACATAGCACGTGGGAAACGTAGCCCTTAAATTAAGGGAATGATTTGACCTTTAACCAATACAATAAAAGTGAAAGTTGATTTTTTCC CTTAACAAGTAACAACCCAAGTGGCAAATATGAAAAAGGTAAGGATGAAATTGCAAAAAAGGAATAAGTGACCTAGCATATATATACATATATGTATGTT TTGTATGAATGAAACATAGAAAGGAAGATGAGTTATGAAAAGGTTTATAGATCCGCTTACAGAGGCGTGAGGTCTCTTCTCTCTGCTTCTAAATGCTCTA ATTCTCGTTTTTACTCTGAAGGGCTTGCAGTAGGTGCTGCAGCTGCAGTTTCATTCACTACTAAAGTTCCTGTTCTAGCTTCAGCTTATAGGAAGTCTCG TTCTGGAAGTGGTTCCGGAGCATGGATTTCAGGAGCTCTCGCTCTTCCTGCTGCAGCTTACATGCTCCAAGATCAGGAGGTGCATGCTGCAGAGCTGGAG CGTACCTTCATTGCTATTAAGCCTGATGGAGTGCAGAGAGGACTGATTTCAGAGATTATTTCACGTTTCGAGAGAAAAGGGTACAAGCTCGTAGGAATTA AAGTACTGACTCCTTCGAAGGAATTTGCCCAGAAGCATTATCATGACCTAAAGGAAAGACCCTTCTTTGGTGAGCTATGTGGATTCCTAAGCTCTGGTCC TGTTATTGCAATGGTAAGAATTTACCAATCTCTTGTTTTAGGGATTGAAAACAAACACCAGATGTTCATAATCAATCCTATTTCCCCAAAAAAAATTGAT GTCACAGGGTTGGGAAGGACAGGGCGTTATAGGGTATGGCCGGAAACTAATCGGAGCCACGGATCCACAGAAATCAGAGCCCGGAACTATCAGAGGTGAT CTTGCTGTTAATGTTGGAAGAAATATCATCCATGGGAGTGATGGTCCAGAAACTGCTAAGGATGAGATTAAGTTGTGGTTTAAGCCAGAGGAGTTAGTTA ATTACACCAGCAATGCCGAGAAGTGGATTTATGGTGCCAATTGATTATTTTCCTCACCCATTTTGACTTTCCATCTTGCTAGCATAAGGAATGAGAAGGG AAGCATGATTTTTGTAATAAATTATTTGTCTCTCGTGAGAACCAAAATGTGAACAATGACCCTATAAGCCATGAATAAGTGGAAATGAGAACAATTCGTT AGCCCTAGTATATTTATTTCACTATATTGGGAATTAGGAATTACATTATTTCATCTCTCACATGAAGACTATCTACTTCAATTTCTGCGCTAGTTACTTC AATGCCAACAAGGATCTGTTGTCCCAAAGCCTATTCTAAACGAAAGTAACATGCCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_152709; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_475416
| Blastp | Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial from Arabidopsis with 72.96% of identity |
|---|---|
| Blastx | Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial from Arabidopsis with 72.96% of identity |
| Eggnog | Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (By similarity)(COG0105) |
| Kegg | Link to kegg annotations (AT4G23900) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_016202178.1) |
| Pfam | Nucleoside diphosphate kinase (PF00334.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |