| Id Trinity | TRINITY_DN47451_c0_g3_i4 |
|---|---|
| Name Transcript | Ll_transcript_474932 |
| Sequence | ATATGAATGTTTAATTTTTTTTGACTAATGTAGCATGTTGTTATTGGTTTGGTACAAACTTTGGGATAGAATTTAGGACAACAAATCCTGTCCCTTCCTT CACTCCCTATATAAACCCACACTACCTCTCATTCCTCTCTAATTCTCTTCTTCTCTTTTACACACACCAGACCAAACACACACTGTGTAGTAGAAGAAGA AGAAGTAACAAACAACAATGGTGAAGGTTCACTCTCCACGATGCTTCATCACTCTCATCCTTCTACTTATGCCACTGCTTTTAACTACAATCAACGCGTT CAATCAAAACCAGAACCAAAAACAACTAAGGGATGGTGATATTGTAGAAGAAGCGGACTTGAAGAATTCATCAATGGCTGAAACGGAAGGGTCAGGTGAT GATGCTTTCAATGAGCATGCAGTTGATAATCCAGAGGAGATAGTTTCTATGGTTGACATGACAATCCGCAACTACACAGAGAGAAGAAATCTCAATTTTT TCTCATGCGGGACAGGGAATCCCATTGATGATTGTTGGCGCTGTGACAAGCTTTGGTACCGTAACAGAAAACGCTTAGCCGATTGCGCCATTGGTTTCGG ACGTAACGCCATTGGTGGTCGTGATGGACGCTACTACGTTGTGACTGACCCAAGCGACAACGACGCTGTCAATCCTAGACCAGGTACCCTTCGCCATGCT GTCATTCAAGACAGGCCCTTATGGATAGTGTTCAAGAGAGACATGGTGATCACATTAACGCAAGAACTCATCATGAACAGTTTCAAGACCATTGATGCTC GTGGTTTTAACGTTCACATTGCTCATGGAGCATGCATTACAATCCAATACATCACCAATGTCATCATTCATGGACTCAATATTCATGATTGCATCCAAAC TGGGAATGCTATGGTTCGTAGTTCGCCTTCACATTTTGGATGGAGGACAATGGCTGATGGGGATGGGATTTCCATCTTTGGTGCCAGTCACATTTGGGTT GATCATAACTCTCTCTCCAATTGCTCTGATGGACTTATTGATGCTATTATTGGCTCTACTGCCATCACCATATCCAACAATTTCTTCACTCGCCACAATG AGGTTATGCTATTGGGTCATAGTGATTCTTATGCTCGAGACAAGCATATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTGTTCAAAGAAT GCCAAGGTGCAGACATGGATATTTCCATGTGGTAAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGTAGTGCTAATCCCACAATTAACAGC CAAGGCAACCGATATCTTGCCCCTCTCAACTCCCATGCTAAGGAGGTAACATCTTAATATGTGTAATGTGCTAGCAACTAAAATATGGTAATGATATTTT TTATCGGCAATTGTTATTACGTTAGTATTTTTGTTTTGGGTGAGACTTGAACTATCAACATCGTTCACCCTCACCATCAAACCACAACCTCCTACATTCC GTTCCTTAAGCCCAGTGTTTTAAATTGCGGTAATTGCGGCCGTTGCGATGCGAATTGCAGCTGTTGCGGTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_152725; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_474932
| Blastp | Probable pectate lyase 10 from Arabidopsis with 76.82% of identity |
|---|---|
| Blastx | Probable pectate lyase 10 from Arabidopsis with 85.22% of identity |
| Eggnog | pectate lyase activity(COG3866) |
| Kegg | Link to kegg annotations (AT3G24670) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019450202.1) |
| Pfam | Pectate lyase (PF00544.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |