Ll_transcript_474934

• Id Trinity: TRINITY_DN47451_c0_g3_i5
• Name Transcript: Ll_transcript_474934
• Sequence: ATATGAATGTTTAATTTTTTTTGACTAATGTAGCATGTTGTTATTGGTTTGGTACAAACTTTGGGATAGAATTTAGGACAACAAATCCTGTCCCTTCCTT CACTCCCTATATAAACCCACACTACCTCTCATTCCTCTCTAATTCTCTTCTTCTCTTTTACACACACCAGACCAAACACACACTGTGTAGTAGAAGAAGA AGAAGTAACAAACAACAATGGTGAAGGTTCACTCTCCACGATGCTTCATCACTCTCATCCTTCTACTTATGCCACTGCTTTTAACTACAATCAACGCGTT CAATCAAAACCAGAACCAAAAACAACTAAGGGATGGTGATATTGTAGAAGAAGCGGACTTGAAGAATTCATCAATGGCTGAAACGGAAGGGTCAGGTGAT GATGCTTTCAATGAGCATGCAGTTGATAATCCAGAGGAGATAGTTTCTATGGTTGACATGACAATCCGCAACTACACAGAGAGAAGAAATCTCAATTTTT TCTCATGCGGGACAGGGAATCCCATTGATGATTGTTGGCGCTGTGACAAGCTTTGGTACCGTAACAGAAAACGCTTAGCCGATTGCGCCATTGGTTTCGG ACGTAACGCCATTGGTGGTCGTGATGGACGCTACTACGTTGTGACTGACCCAAGCGACAACGACGCTGTCAATCCTAGACCAGGTACCCTTCGCCATGCT GTCATTCAAGACAGGCCCTTATGGATAGTGTTCAAGAGAGACATGGTGATCACATTAACGCAAGAACTCATCATGAACAGTTTCAAGACCATTGATGCTC GTGGTTTTAACGTTCACATTGCTCATGGAGCATGCATTACAATCCAATACATCACCAATGTCATCATTCATGGACTCAATATTCATGATTGCATCCAAAC TGGGAATGCTATGGTTCGTAGTTCGCCTTCACATTTTGGATGGAGGACAATGGCTGATGGGGATGGGATTTCCATCTTTGGTGCCAGTCACATTTGGGTT GATCATAACTCTCTCTCCAATTGCTCTGATGGACTTATTGATGCTATTATTGGCTCTACTGCCATCACCATATCCAACAATTTCTTCACTCGCCACAATG AGGTTATGCTATTGGGTCATAGTGATTCTTATGCTCGAGACAAGCATATGCAAGTAACCATTGCATACAACCATTTTGGGGAGGGTCTTGTTCAAAGAAT GCCAAGGTGCAGACATGGATATTTCCATGTGGTAAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGTAGTGCTAATCCCACAATTAACAGC CAAGGCAACCGATATCTTGCCCCTCTCAACTCCCATGCTAAGGAGGTGACAAAGAGGGTGGAAACAGGGGAAGATACAGGGGAGGATACATGGAAAAACT GGAATTGGAGATCTGATGGAGACCTTTTACTGAATGGAGCATATTTTACTGCATCAGGAGCAGGATCTGCAGCAAGTTATGCTAGAGCCTCAAGTTTGTC AGCACAATCTTCTTCAGTGGTTGGTACCCTTACCTCTGCTGCTGGTGTTCTTAACTGCCGCAGAGGTACCATGTGTTAACACCAAACACCATCACTAACC AAGTAAAAACCAACTCCAAAAACCTAAAGCAAAGTGGTAAAAAGAAGAAAGAAAATGGTGCATAAAGGAAAGGAACAAAGTATTGAATTGTTATAGACAT ATTGAGTGAGTTTGCACATTGGAGAAAGAAAAAAGTGTACATTTAATGTTAACTGTTGTCAAATTGATAACAATGATGATTGTTAGAAGCCTTTTCCCAG TTTGGAAATTTGTGAGTTGGGAAATAGTTTCACCCCTTAATTTTCCAACAGAAACAAAATATTTTCTCCTATGTTCTTCCCATGTAGCTTTTCTCTTCCT AGTACCTATATAATATATATCCTCTATAGTAAGGTTTTGTGATCTCGAATCAGTTTGTATGGCATGTGTACCATTTTATTTAGTTTTAGAAATGTTTTTA TAGAAAATGATGAAACATTTATCTCTTTATAATAGGAGATACTTTATTCTCTTT
• Tissue: pods
• Gene name: LI_gene_152725;
• Additional information: details;

Expression of Ll_transcript_474934

FPKM

• PAB: 0.2
• PNAB: 9.5
• PS1: 1.3
• PS2: 0.7
• PS3: 0.9
• PW1: 18.3
• PW2: 4.2
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_474934

• Blastp: Probable pectate lyase 15 from Arabidopsis with 71.92% of identity
• Blastx: Probable pectate lyase 10 from Arabidopsis with 80.92% of identity
• Eggnog: pectate lyase activity(COG3866)
• Kegg: Link to kegg annotations (AT4G13710)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019450202.1)
• Pfam: Pectate lyase (PF00544.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;