Ll_transcript_475977

• Id Trinity: TRINITY_DN47452_c1_g2_i2
• Name Transcript: Ll_transcript_475977
• Sequence: CGCTGGGTTGCCTCCCAGTTAGCGCTCGTTTACCGTCATTAGCTTGACAGATGTTTCTGAGGGACAAGGTCATTCTGATTCGTCCTGTGTAATGAAATCT GTTGCATTACAAAGATAATGTTTCAACCGTTGTCCGTTGACCGTCCAAGTTGTCTGAGACTTGGGGTCTTCGATCTCTATTGCTCCGTATTCCGTAACTG TTTTGACCACAAATGGTCCTGTCCATTTGGTCTTGAATTTGCCCGGGAATATTTGGAGCCTTGAATTGAACAAAAGTACCTGTTGCCCCGGATGAAATTC TTTCTTTGTGATTTTGGCATCATGGTACTTTTTTGTTTTTTCTTTATACAGCTTGGAGGATTCGTAAGCTTGGAACCTCATTTCTTCCAATTGATGTAGT TGATTTTTTCTCTGTTTTCCTGCATCTTTTAAATCAAAGTTTAAAAATTTAAGTGCCCAATAGGCTTTATGCTCCAATTCAACTGGTAAATGACAAGCTT TGCCATAAACTAGTTGGTATGGAGTTTTGCCTATTGGTGATTTAAAGGCAGTTCTATAGGCCCACAAAGTATCATTCAGCTTTTGTGACCAGTCTTTTCT GGATGAAGACACGGTTTTTTGCAAAATTCTTTTAAGCTCTCTGTTTGATACTTCGGCTTGGCCATTTGTTTGGGGGTGATAAGGTGATGCAACCTTATGA TGAACATTGTAAAATTCGAGGGTTTTCTTTAACGAATTGTTAATGAAATGAGACCCCCCATCACTAATTAATACTCTTGGAGTGCCGAAGCGCGCAAAAA TTTGTTTTAAAAATTTGATAACCGTTTGCGAGTCGGCTTTAGGTGTTGCCTGTGCTTCCACCCATCTGGAAACATAGTCAACAGCTACCAAGATATATTC ATTTGAAAATGATGGTGGAAAGGGTCCCATGAAGTCAATGCCCCAGCAGTCAAAAATTTCAATTTCTAAAATATTTTGCAAAGGCATTGCACTTTTTTTA CCCAGTCCCCCGAATTTTTGGCATGCATCACATTTTTGAACATGTATTTGGGCATCTCTAAAAATGGTTGGCCAAAAGAACCCTGATTGGAGTACTTTGG TCGCAGTTCTTTGCCCATTATAATGCCCCCCATAGGCCGAATTATGGCAATTTCAAAAACATATAAAATTAACCAAGGCATCAACTTGAATGCTCG
• Tissue: pods
• Gene name: LI_gene_152729;
• Additional information: -

Expression of Ll_transcript_475977

FPKM

• PAB: 0.4
• PNAB: 0.8
• PS1: 0.4
• PS2: 0.3
• PS3: 0.8
• PW1: 0.6
• PW2: 0.7
• PW3: 0.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_475977

• Blastp: Pol polyprotein from Murine leukemia virus with 27.74% of identity
• Blastx: Pro-Pol polyprotein from Spumavirus with 26.77% of identity
• Eggnog: -
• Kegg: -
• CantataDB: Link to cantataDB annotations (CNT0001274)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_014629745.1)
• Pfam: Integrase core domain (PF00665.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;