Id Trinity | TRINITY_DN47456_c0_g2_i12 |
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Name Transcript | Ll_transcript_475073 |
Sequence | CAACAATGGATAATTATATATAGAGTCACATGTTTGCACTCACTCAATTTGAGTGGTAATGATAATGAGATAGAGATATACATGGCTCTCTCTCTTACAA TCTCAGTCCCTTTCCCACAACTACAACAACGTTTCCCTATTCTCTTCAAACCAAAACCAAAGCCAACTCTTTCTTTCATTACTTCTTCATATTCCTTACC TGATTTCAAAGTGGGTCAAGATTTACCACCTAACTACGCGGATTGGCTTCCTAAACCTGACCCTAAGCATCGCAGAAGAGCTGGTATTCTACTCCATCCG ACGTCGTTTCGAGGCCCTTATGGGATCGGTGACTTTGGTGATGAGGCCTTTCGTTTCATTGACTGGCTTCATTACTCTGGTTGCTCCCTTTGGCAGGTGT TACCTCTAGTGCCTCCTGATGGAGCTGGATCTCCTTACTCTAGCCAGGATGCAAATTGTGGCAACACTCTCTTGATCTCTCTCGAACACCTTGTTGAGGA TGGCTTGTTGGAAAAGCATGAGCTTCCTGAACCAATGTCAGATTCTTTACATGTGTCACTGACCTAATTTTTAACTCTCTTTTTCTCTAGTGTTCCATAT TTGTCGTCTTACAGTTATTATTAAATCAACGCAGTGAGGCCGAGCAAGTGAATTTTTCAGTGGTTGCCGATCTTAAGAATCCTTTGATAACTAAAGTAAG ATATTTAGATCTACATTATTGCTACTATTCTTGTACGCCTCATAACAAGGTGTTGGAATTCGTCTGAGTATTTTCTATCCACCAGATATTTTGATGTTTT AATTATCAGTAACGTAGTTTATCTCTGTTGCCCTTCTTCTTGCTTTATAGAAGTCAAGCCATTTTATATAGATCTGTATGATATGTTTGAACAATATCCT TCCATGTATTCAGCCATTCGCATTATACATTGAACCTTAAATAACCATCATGTTCAGTGTCACTATCTAGCACATCCCCATAAACTGTAACTACTTGTTG CTGTTCAACTTTTACATGGAATCTTTAATTAGCTTGTACAAAATAGCATTTCCGTGGGGATAGAGACAAGACTAAAGTGGGCCTAGTGCTTAAAAAAGAC TTCAACGAAATATGATTTTGAATCAAGATTCAGGAAAGAAGTGGTAGTATTTTGCTTAAGAAGTTTTCTGGTCATTTCGTCAGCCACACTAGTTTTGTCG GTGGAGTTTTGCTTGGGAATATACCTAGAGATTTTGCTTGAACGATAGTCTAATAGTACAATGATTTTCCCTTGTTGAAGTCTAGTGTCACAATGGTGAG TTAAGTAATGAAGTGAGTTATTCTAATAGTACAATGATTTTAACTCTTCCTTTGCTGCACAAGTATTACTCTGTTTTCTTCACACCGTTGAACATTTCAG CACCTTGTGTGTGCCTTTTATTAATTTCCTTTTATTGAACCATTTCTTGAAGGCTGCAAAGAGGCTCATATCGAGTGAAGGGGAGCTCAAAAAACAGCTT GAGACTTTTCGTAGAGACCCTACCATATCAAGCTGGCTTGAAGATGCAGCTTATTTCGCTGCTATTGATGACAGTTTAAATGGAATCAACTGGTACGATT GGCCTGAACCTTTAAGAAACCGCCATCTTGTAGCTCTAGAAGATATTTGTCAACAAAAGAGAGACTTTATAGATGTATTTATTGCCCAACAGTTCTTGTT CCAAAGGCAATGGCAGAAAGTTTGCAACTACGCACAGAGCAGAGGAGTCAGTATAATGGGAGATATGCCTATTTATGTGGGTTATCATAGTGCGGATGTT TGGGCAAATAAAAATCAGTTTTTACTGGTTAGTGGTTTCTAAAGAATTTAGCTGTCACTCTGAAGTATGAAGTGTGATCTAACCTTTTTTCAGAGCATTT TGTACCTTTTCATTTCAAAATATTCTCTATTTGTCTTACAGAATAGGAAAGGTTTTCCTCTTTTAGTTAGTGGTGTTCCACCTGATGCATTCAGTGATAC TGGTCAGCTGTGGGGCAGGTTTGATGTTAATCCTATGATAAATGTCTTTCCATATCAGTCTTACTACCTGAACCTTTTCCATGTTTGCTATTTAATCAAG TCCTAATTTTGACATAAATTTCCTTTGTTTTCTGTGAAGATGTCTGATTATTCTGTTATCATGGTCAGCAAGACATCTCTCATTTTCATTTTAGATTTTT AGTTCATTTCATCTTTCCGTGCTTCTTTAACCATCTATTACAATATATCCTGTCTGATTATTTCTGTTTTCAGCATTTTCCCTTAGTCTACACTTCTTTT TTGGTAATAGATGCTAACATGTTGTGAAGCACCTTGTAAAAGGTCTCTCATCTCTTTTGATTATAGATTTCTTATCTTTTCTTATTTTCTCGTTTTAATG AAAAAGCCCTCTGTATGATTGGAATGCCATGGACAAAGAAGGATACTCATGGTGGATACGCCGCCTCCGGCGTGCACAGGATTTATATGACGAATTTAGA ATTGACCACTTTAGAGGATTTGCTGGATTTTGGGCTGTTCCTTCTGAAGCAAAAGTAGCTATGGTTGGGAAGTGGAAGGTTGGACCTGGGTTATCTTTCT TTGATGCCATTTTCAGAGCTATTGGAAGGATTAATATTATAGCAGAAGACTTGGTATGTTTTATTATATTTTATTAATAACTTGAAAATGTTCCAACTTT ACTCTAGGGATGTGCATAAACAATTTGTGAATCAAATCAAACTTAAAATTGGACTTAACCAAACCACAAAATAACCGGACCTGTAAATCAATTAACCAAC CAAACCATTTTTTTCCAATTCGGTTCACCAATCCGAACCTTCTGCTATTGCAATATGATGAGCCTATACTTACCAAACACAACAGAAAAACGATATGAGA ACCCAACCCATTGCTTCAGATATTAAACGTAACCCCCAATCATGTTAACCTCTTCATCTTTACTGTTTCATTTCTACTATACATCAAAGTTTCAATAAAT ATCTTTTGGAAAAGTTGAATACATAGTCACCTGCTTAAACTGTGATGTGAATTTTATTAATTGGACACAGTCTTCTACCCCATTAGAGTGTGTGATGTGA GTTTTATTAACTAGCTGCCATCTTTTATGCATTGTAACAAACCAAGTTATTTTCTTATTTGAGTTTATGTTTGAGTTAAACCATAGTTTCCCATTTGAGA TTTAATATTAGTGAGCGTGTGTACATTTTCAAAGTGTCACTCACTTTTTGGACAGTGTAGGAAGAAGTTTTTTATTCACTTGGTTAGTTAGTTATTATCA TTATCATATTTTATAATTTATGAAATTTCAGTCTGATACATTTTTCTTTTGTTCTTTTGGTGCATACTTGATCATGGTAGATGTTATCACATTCTTCAAC TCCTATACTCAGACCAATGCGAAAACTTGGTGAAATTTCATGAAGAATTAGATTTAGAAGTTAGCTATTAAGCAAGTATAGTTATCTTCCTGAATTAGAT AGGGCCATGCCATGTGTTCAAGGAAAAGTTGGTTAACTTATCTTGTCTCCTGATTTCCAATGCAAAACAGCACCACTTGTATGAACCAATGGGTTATCAA GATGACGTTATGACATGGAAATTACTAAATAAGATCTTATATCCATAAGATCTTGTAAGATCTCAAGGATGAGAAAGGATCTAAAAAACCAAAATGTTTT GCAGCTTACAAACAATAGATTTAAGTAGCTCATTTTGAAAACTGAAACAAACAGATGTGCAAACAAACTGGATGAAGAGGAAATTTGATGTACTTCAGAA GAAAGGAATTGAAATTGATGACGAGATTAGGGTTCTTAGAGGTGATTGGGTTCTGATCACATGTTGATGTTCAGTTCAGTTGGTATAGGTTCACCAAATT GAAATTGCACTAGAAAAACATTTTGGATTGCTGAACCAATTTTGGGAAAATTGTTTGGCTCATGAACTATTTTACAAGTTTGGTTATTTTTGTGGTTTGT TTCACACATCGTTTTTTATACACCTGACTTTTCATTCACATATGACTCTTCCTGAGGCATACTCCTGTAATTGTTTGGGTTTGTGATTTATGGCAGGGAG TTATCACTAAGGATGTAGTCCAACTAAGAAAGTCCATTGGAGCACCTGGAATGGCTGTTCTCCAGTTTGGGTTTGGAGGTGATGCTGATAATCCTCATCT GCCTCATAATCAGGAGTGCAATCAAGTTGTTTATACAGGGACTCATGACAATGACACTATTAAAGGTTGGTGGGAAGCTTTGAAGCCAGAAGAGAAATCC AATGTGTTAAGTTACCTTTCACTAACAGAGGAAGGTGACATTTCGTGGGCTCTAATCAAGACAGCACTAGCTTCTGTTGCTCAAACAGCAATAATACCTA TGCAAGATGTTCTTGGATTGGGAAGTTCTGCAAGGATGAATACTCCTGCAACTCAGTTTGGAAACTGGGGTTGGAGAATTGCAAGTTCTGTGAGCTTTGA TAGCTTGGAGAAAGAGGCAGAAAGACTTAAAGAGATGCTTTCGATGTATGGCCGGCTTTGAATATGGAAATTCTCCTTTGATAATCAAGAGGAAGAGTTT GCTCTGTAAGGCGAACCGAAGCTGCCGAGCCTGAAGTTTATTCCCAAGTTGCTAGAGTATGAATGATGCTGATCAATCAATGCTGGGTTGTCTTATGTTT CGAAGGTTCCTCAAACAAAAGAACTGAAAATAACTTAAATTGTATGCATGATGAGGAGTTCGGAATTCAAACATTGATTTCTTTATGTGATTCAAAGGAT AAGAACCCAAGAAATTTGGCATAAATGTGTGCAAAAAGCTAGTCCTATCCCCTGAAAACAAAATAAATAAATAATGTTGAGAGTGGGATTTGAACCCACG CCCTTTCGGACCAGAACCTTAATCTGGCGCCTTAGACCAACTCGGCCATCTCAACGTTTTTGTTATCGGGTTGCATTTAATAATATTTGAGTTCTAC BLAST |
Tissue | pods |
Gene name | LI_gene_152749; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_475073
Blastp | 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic from Arabidopsis with 72.06% of identity |
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Blastx | 4-alpha-glucanotransferase, chloroplastic/amyloplastic from Solanum with 66.14% of identity |
Eggnog | 4-alpha-glucanotransferase(COG1640) |
Kegg | Link to kegg annotations (AT5G64860) |
CantataDB | Link to cantataDB annotations (CNT0002507) |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019430233.1) |
Pfam | 4-alpha-glucanotransferase (PF02446.16) |
Rfam | tRNA (RF00005) |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |