| Id Trinity | TRINITY_DN47456_c0_g2_i5 |
|---|---|
| Name Transcript | Ll_transcript_475057 |
| Sequence | TTTTGATGTTTTAATTATCATTAACGTAGTTTATCTCTGTTGCCCTTCTTCTTGCTTTATAGAAGTCAAGCCATTTTATATAGATCTGTATGATATGTTT GAACAATATCCTTCCATGTATTCAGCCATTCGCATTATACATTGAACCTTAAATAACCATCATGTTCAGTGTCACTATCTAGCACATCCCCATAAACTGT AACTACTTGTTGCTGTTCAACTTTTACATGGAATCTTTAATTAGCTTGTACAAAATAGCATTTCCGTGGGGATAGAGACAAGACTAAAGTGGGCCTAGTG CTTAAAAAAGACTTCAACGAAATATGATTTTGAATCAAGATTCAGGAAAGAAGTGGTAGTATTTTGCTTAAGAAGTTTTCTGGTCATTTCGTCAGCCACA CTAGTTTTGTCGGTGGAGTTTTGCTTGGGAATATACCTAGAGATTTTGCTTGAACGATAGTCTAATAGTACAATGATTTTCCCTTGTTGAAGTCTAGTGT CACAATGGTGAGTTAAGTAATGAAGTGAGTTATTCTAATAGTACAATGATTTTAACTCTTCCTTTGCTGCACAAGTATTACTCTGTTTTCTTCACACCGT TGAACATTTCAGCACCTTGTGTGTGCCTTTTATTAATTTCCTTTTATTGAACCATTTCTTGAAGGCTGCAAAGAGGCTCATATCGAGTGAAGGGGAGCTC AAAAAACAGCTTGAGACTTTTCGTAGAGACCCTACCATATCAAGCTGGCTTGAAGATGCAGCTTATTTCGCTGCTATTGATGACAGTTTAAATGGAATCA ACTGGTACGATTGGCCTGAACCTTTAAGAAACCGCCATCTTGTAGCTCTAGAAGATATTTGTCAACAAAAGAGAGACTTTATAGATGTATTTATTGCCCA ACAGTTCTTGTTCCAAAGGCAATGGCAGAAAGTTTGCAACTACGCACAGAGCAGAGGAGTCAGTATAATGGGAGATATGCCTATTTATGTGGGTTATCAT AGTGCGGATGTTTGGGCAAATAAAAATCAGTTTTTACTGGTTAGTGGTTTCTAAAGAATTTAGCTGTCACTCTGAAGTATGAAGTGTGATCTAACCTTTT TTCAGAGCATTTTGTACCTTTTCATTTCAAAATATTCTCTATTTGTCTTACAGAATAGGAAAGGTTTTCCTCTTTTAGTTAGTGGTGTTCCACCTGATGC ATTCAGTGATACTGGTCAGCTGTGGGGCAGGTTTGATGTTAATCCTATGATAAATGTCTTTCCATATCAGTCTTACTACCTGAACCTTTTCCATGTTTGC TATTTAATCAAGTCCTAATTTTGACATAAATTTCCTTTGTTTTCTGTGAAGATGTCTGATTATTCTGTTATCATGGTCAGCAAGACATCTCTCATTTTCA TTTTAGATTTTTAGTTCATTTCATCTTTCCGTGCTTCTTTAACCATCTATTACAATATATCCTGTCTGATTATTTCTGTTTTCAGCATTTTCCCTTAGTC TACACTTCTTTTTTGGTAATAGATGCTAACATGTTGTGAAGCACCTTGTAAAAGGTCTCTCATCTCTTTTGATTATAGATTTCTTATCTTTTCTTATTTT CTCGTTTTAATGAAAAAGCCCTCTGTATGATTGGAATGCCATGGACAAAGAAGGATACTCATGGTGGATACGCCGCCTCCGGCGTGCACAGGATTTATAT GACGAATTTAGAATTGACCACTTTAGAGGATTTGCTGGATTTTGGGCTGTTCCTTCTGGTGAGCTACACTAAACTTATGTTAGCTTTTTGCTATCTGTGG TGTTTTTATAACATGTATATGCTCTATGAATGTGCAGAAGCAAAAGTAGCTATGGTTGGGAAGTGGAAGGTTGGACCTGGGTTATCTTTCTTTGATGCCA TTTTCAGAGCTATTGGAAGGATTAATATTATAGCAGAAGACTTGGTATGTTTTATTATATTTTATTAATAACTTGAAAATGTTCCAACTTTACTCTAGGG ATGTGCATAAACAATTTGTGAATCAAATCAAACTTAAAATTGGACTTAACCAAACCACAAAATAACCGGACCTGTAAATCAATTAACCAACCAAACCATT TTTTTCCAATTCGGTTCACCAATCCGAACCTTCTGCTATTGCAATATGATGAGCCTATACTTACCAAACACAACAGAAAAACGATATGAGAACCCAACCC ATTGCTTCAGATATTAAACGTAACCCCCAATCATGTTAACCTCTTCATCTTTACTGTTTCATTTCTACTATACATCAAAGTTTCAATAAATATCTTTTGG AAAAGTTGAATACATAGTCACCTGCTTAAACTGTGATGTGAATTTTATTAATTGGACACAGTCTTCTACCCCATTAGAGTGTGTGATGTGAGTTTTATTA ACTAGCTGCCATCTTTTATGCATTGTAACAAACCAAGTTATTTTCTTATTTGAGTTTATGTTTGAGTTAAACCATAGTTTCCCATTTGAGATTTAATATT AGTGAGCGTGTGTACATTTTCAAAGTGTCACTCACTTTTTGGACAGTGTAGGAAGAAGTTTTTTATTCACTTGGTTAGTTAGTTATTATCATTATCATAT TTTATAATTTATGAAATTTCAGTCTGATACATTTTTCTTTTGTTCTTTTGGTGCATACTTGATCATGGTAGATGTTATCACATTCTTCAACTCCTATACT CAGACCAATGCGAAAACTTGGTGAAATTTCATGAAGAATTAGATTTAGAAGTTAGCTATTAAGCAAGTATAGTTATCTTCCTGAATTAGATAGGGCCATG CCATGTGTTCAAGGAAAAGTTGGTTAACTTATCTTGTCTCCTGATTTCCAATGCAAAACAGCACCACTTGTATGAACCAATGGGTTATCAAGATGACGTT ATGACATGGAAATTACTAAATAAGATCTTATATCCATAAGATCTTGTAAGATCTCAAGGATGAGAAAGGATCTAAAAAACCAAAATGTTTTGCAGCTTAC AAACAATAGATTTAAGTAGCTCATTTTGAAAACTGAAACAAACAGATGTGCAAACAAACTGGATGAAGAGGAAATTTGATGTACTTCAGAAGAAAGGAAT TGAAATTGATGACGAGATTAGGGTTCTTAGAGGTGATTGGGTTCTGATCACATGTTGATGTTCAGTTCAGTTGGTATAGGTTCACCAAATTGAAATTGCA CTAGAAAAACATTTTGGATTGCTGAACCAATTTTGGGAAAATTGTTTGGCTCATGAACTATTTTACAAGTTTGGTTATTTTTGTGGTTTGTTTCACACAT CGTTTTTTATACACCTGACTTTTCATTCACATATGACTCTTCCTGAGGCATACTCCTGTAATTGTTTGGGTTTGTGATTTATGGCAGGGAGTTATCACTA AGGATGTAGTCCAACTAAGAAAGTCCATTGGAGCACCTGGAATGGCTGTTCTCCAGTTTGGGTTTGGAGGTGATGCTGATAATCCTCATCTGCCTCATAA TCAGGAGTGCAATCAAGTTGTTTATACAGGGACTCATGACAATGACACTATTAAAGGTTGGTGGGAAGCTTTGAAGCCAGAAGAGAAATCCAATGTGTTA AGTTACCTTTCACTAACAGAGGAAGGTGACATTTCGTGGGCTCTAATCAAGACAGCACTAGCTTCTGTTGCTCAAACAGCAATAATACCTATGCAAGATG TTCTTGGATTGGGAAGTTCTGCAAGGATGAATACTCCTGCAACTCAGTTTGGAAACTGGGGTTGGAGAATTGCAAGTTCTGTGAGCTTTGATAGCTTGGA GAAAGAGGCAGAAAGACTTAAAGAGATGCTTTCGATGTATGGCCGGCTTTGAATATGGAAATTCTCCTTTGATAATCAAGAGGAAGAGTTTGCTCTGTAA GGCGAACCGAAGCTGCCGAGCCTGAAGTTTATTCCCAAGTTGCTAGAGTATGAATGATGCTGATCAATCAATGCTGGGTTGTCTTATGTTTCGAAGGTTC CTCAAACAAAAGAACTGAAAATAACTTAAATTGTATGCATGATGAGGAGTTCGGAATTCAAACATTGATTTCTTTATGTGATTCAAAGGATAAGAACCCA AGAAATTTGGCATAAATGTGTGCAAAAAGCTAGTCCTATCCCCTGAAAACAAAATAAATAAATAATGTTGAGAGTGGGATTTGAACCCACGCCCTTTCGG ACCAGAACCTTAATCTGGCGCCTTAGACCAACTCGGCCATCTCAACGTTTTTGTTATCGGGTTGCATTTAATAATATTTGAGTTCTAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_152749; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_475057
| Blastp | 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic from Arabidopsis with 72.06% of identity |
|---|---|
| Blastx | 4-alpha-glucanotransferase, chloroplastic/amyloplastic from Solanum with 66.14% of identity |
| Eggnog | 4-alpha-glucanotransferase(COG1640) |
| Kegg | Link to kegg annotations (AT5G64860) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019430233.1) |
| Pfam | 4-alpha-glucanotransferase (PF02446.16) |
| Rfam | tRNA (RF00005) |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |