| Id Trinity | TRINITY_DN47456_c0_g2_i6 |
|---|---|
| Name Transcript | Ll_transcript_475060 |
| Sequence | CAACAATGGATAATTATATATAGAGTCACATGTTTGCACTCACTCAATTTGAGTGGTAATGATAATGAGATAGAGATATACATGGCTCTCTCTCTTACAA TCTCAGTCCCTTTCCCACAACTACAACAACGTTTCCCTATTCTCTTCAAACCAAAACCAAAGCCAACTCTTTCTTTCATTACTTCTTCATATTCCTTACC TGATTTCAAAGTGGGTCAAGATTTACCACCTAACTACGCGGATTGGCTTCCTAAACCTGACCCTAAGCATCGCAGAAGAGCTGGTATTCTACTCCATCCG ACGTCGTTTCGAGGCCCTTATGGGATCGGTGACTTTGGTGATGAGGCCTTTCGTTTCATTGACTGGCTTCATTACTCTGGTTGCTCCCTTTGGCAGGTGT TACCTCTAGTGCCTCCTGATGGAGCTGGATCTCCTTACTCTAGCCAGGATGCAAATTGTGGCAACACTCTCTTGATCTCTCTCGAACACCTTGTTGAGGA TGGCTTGTTGGAAAAGCATGAGCTTCCTGAACCAATTGAGGCCGAGCAAGTGAATTTTTCAGTGGTTGCCGATCTTAAGAATCCTTTGATAACTAAAGCT GCAAAGAGGCTCATATCGAGTGAAGGGGAGCTCAAAAAACAGCTTGAGACTTTTCGTAGAGACCCTACCATATCAAGCTGGCTTGAAGATGCAGCTTATT TCGCTGCTATTGATGACAGTTTAAATGGAATCAACTGGTACGATTGGCCTGAACCTTTAAGAAACCGCCATCTTGTAGCTCTAGAAGATATTTGTCAACA AAAGAGAGACTTTATAGATGTATTTATTGCCCAACAGTTCTTGTTCCAAAGGCAATGGCAGAAAGTTTGCAACTACGCACAGAGCAGAGGAGTCAGTATA ATGGGAGATATGCCTATTTATGTGGGTTATCATAGTGCGGATGTTTGGGCAAATAAAAATCAGTTTTTACTGGTTAGTGGTTTCTAAAGAATTTAGCTGT CACTCTGAAGTATGAAGTGTGATCTAACCTTTTTTCAGAGCATTTTGTACCTTTTCATTTCAAAATATTCTCTATTTGTCTTACAGAATAGGAAAGGTTT TCCTCTTTTAGTTAGTGGTGTTCCACCTGATGCATTCAGTGATACTGGTCAGCTGTGGGGCAGGTTTGATGTTAATCCTATGATAAATGTCTTTCCATAT CAGTCTTACTACCTGAACCTTTTCCATGTTTGCTATTTAATCAAGTCCTAATTTTGACATAAATTTCCTTTGTTTTCTGTGAAGATGTCTGATTATTCTG TTATCATGGTCAGCAAGACATCTCTCATTTTCATTTTAGATTTTTAGTTCATTTCATCTTTCCGTGCTTCTTTAACCATCTATTACAATATATCCTGTCT GATTATTTCTGTTTTCAGCATTTTCCCTTAGTCTACACTTCTTTTTTGGTAATAGATGCTAACATGTTGTGAAGCACCTTGTAAAAGGTCTCTCATCTCT TTTGATTATAGATTTCTTATCTTTTCTTATTTTCTCGTTTTAATGAAAAAGCCCTCTGTATGATTGGAATGCCATGGACAAAGAAGGATACTCATGGTGG ATACGCCGCCTCCGGCGTGCACAGGATTTATATGACGAATTTAGAATTGACCACTTTAGAGGATTTGCTGGATTTTGGGCTGTTCCTTCTGAAGCAAAAG TAGCTATGGTTGGGAAGTGGAAGGTTGGACCTGGGTTATCTTTCTTTGATGCCATTTTCAGAGCTATTGGAAGGATTAATATTATAGCAGAAGACTTGGT ATGTTTTATTATATTTTATTAATAACTTGAAAATGTTCCAACTTTACTCTAGGGATGTGCATAAACAATTTGTGAATCAAATCAAACTTAAAATTGGACT TAACCAAACCACAAAATAACCGGACCTGTAAATCAATTAACCAACCAAACCATTTTTTTCCAATTCGGTTCACCAATCCGAACCTTCTGCTATTGCAATA TGATGAGCCTATACTTACCAAACACAACAGAAAAACGATATGAGAACCCAACCCATTGCTTCAGATATTAAACGTAACCCCCAATCATGTTAACCTCTTC ATCTTTACTGTTTCATTTCTACTATACATCAAAGTTTCAATAAATATCTTTTGGAAAAGTTGAATACATAGTCACCTGCTTAAACTGTGATGTGAATTTT ATTAATTGGACACAGTCTTCTACCCCATTAGAGTGTGTGATGTGAGTTTTATTAACTAGCTGCCATCTTTTATGCATTGTAACAAACCAAGTTATTTTCT TATTTGAGTTTATGTTTGAGTTAAACCATAGTTTCCCATTTGAGATTTAATATTAGTGAGCGTGTGTACATTTTCAAAGTGTCACTCACTTTTTGGACAG TGTAGGAAGAAGTTTTTTATTCACTTGGTTAGTTAGTTATTATCATTATCATATTTTATAATTTATGAAATTTCAGTCTGATACATTTTTCTTTTGTTCT TTTGGTGCATACTTGATCATGGTAGATGTTATCACATTCTTCAACTCCTATACTCAGACCAATGCGAAAACTTGGTGAAATTTCATGAAGAATTAGATTT AGAAGTTAGCTATTAAGCAAGTATAGTTATCTTCCTGAATTAGATAGGGCCATGCCATGTGTTCAAGGAAAAGTTGGTTAACTTATCTTGTCTCCTGATT TCCAATGCAAAACAGCACCACTTGTATGAACCAATGGGTTATCAAGATGACGTTATGACATGGAAATTACTAAATAAGATCTCTTATCCATAAGATCTTG TAAGATCTCAAGGATGAGAAAGGATCTAAAAAACCAAAATGTTTTGCAGCTTACAAACAATAGATTTAAGTAGCTCATTTTGAAAACTGAAACAAACAGA TGTGCAAACAAACTGGATGAAGAGGAAATTTGATGTACTTCAGAAGAAAGGAATTGAAATTGATGACGAGATTAGGGTTCTTAGAGGTGATTGGGTTCTG ATCACATGTTGATGTTCAGTTCAGTTGGTATAGGTTCACCAAATTGAAATTGCACTAGAAAAACATTTTGGATTGCTGAACCAATTTTGGGAAAATTGTT TGGCTCATGAACTATTTTACAAGTTTGGTTATTTTTGTGGTTTGTTTCACACATCGTTTTTTATACACCTGACTTTTCATTCACATATGACTCTTCCTGA GGCATACTCCTGTAATTGTTTGGGTTTGTGATTTATGGCAGGGAGTTATCACTAAGGATGTAGTCCAACTAAGAAAGTCCATTGGAGCACCTGGAATGGC TGTTCTCCAGTTTGGGTTTGGAGGTGATGCTGATAATCCTCATCTGCCTCATAATCAGGAGTGCAATCAAGTTGTTTATACAGGGACTCATGACAATGAC ACTGTAAGTATTTCTTTTACCTTACGTTTGTGGTTTGCACTGTTAGTTTATTATATCTCTTGGCTGTTTTATTTCCTTATTTCTCTGCTTCAGATTAAAG GTTGGTGGGAAGCTTTGAAGCCAGAAGAGAAATCCAATGTGGGTGCTATATTTAGTAGTCAAGTGTTCTTTTTCAATAAGTTTGATTATAGTTCATCCTG TTCCTTGTTTATATGTTTCAGGTGTTAAGTTACCTTTCACTAACAGAGGAAGGTGACATTTCGTGGGCTCTAATCAAGACAGCACTAGCTTCTGTTGCTC AAACAGCAATAATACCTATGCAAGATGTTCTTGGATTGGGAAGTTCTGCAAGGATGAATACTCCTGCAACTCAGTTTGGAAACTGGGGTTGGAGAATTGC AAGTTCTGTGAGCTTTGATAGCTTGGAGAAAGAGGCAGAAAGACTTAAAGAGATGCTTTCGATGTATGGCCGGCTTTGAATATGGAAATTCTCCTTTGAT AATCAAGAGGAAGAGTTTGCTCTGTAAGGCGAACCGAAGCTGCCGAGCCTGAAGTTTATTCCCAAGTTGCTAGAGTATGAATGATGCTGATCAATCAATG CTGGGTTGTCTTATGTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_152749; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_475060
| Blastp | 4-alpha-glucanotransferase, chloroplastic/amyloplastic from Solanum with 68.92% of identity |
|---|---|
| Blastx | 4-alpha-glucanotransferase, chloroplastic/amyloplastic from Solanum with 63.23% of identity |
| Eggnog | 4-alpha-glucanotransferase(COG1640) |
| Kegg | Link to kegg annotations (102595076) |
| CantataDB | Link to cantataDB annotations (CNT0002507) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019430233.1) |
| Pfam | 4-alpha-glucanotransferase (PF02446.16) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |