Ll_transcript_475514

• Id Trinity: TRINITY_DN47482_c5_g1_i3
• Name Transcript: Ll_transcript_475514
• Sequence: ATGATTTCCATGCACCTTCCCGTACGGAATTACTCCTTCTGGAAAGATCCAATTTTTCTTCTTCAATGAATTGTTTCTCTGTATAAACCACAAACCAAAA GCTTTTATTATTATTAGTATTGTTATTTAAATTTCATTTTATTTGATAAAGGAAGAATCAAATTACTAATTTGTAATCATAAGAGTGTTCAAACTTCAAT CAATATGTCATCTATGTTGCATAGAAGCTTCAAACCCGCTAAATGCAAAACTAAGTTGAAGCTTGCGGTTTCACGCATCAAGATATTGAAGAATAAGAAA GAAGGTGAGGTGAGGAATCTCAAGATGGAATTGGCTCAATTGCTTAACTCTGATCAGGAACAAACTGCTAAAATCAGGGTTGAACATGTTATCAGGGAAG AGAAGCTGCTGGCGGCATATGATCTTGTGGAGATATACTGTGAACTTATTGCAGCACGCTTACCTATAATTGAATCACAGAAAAATTGTCCCATCGATTT GAAGGAAGCAATTGCAAGTGTAATATTTGCATCTCCAAGGTTGTCAGATATACCTGAGCTCGTGGATGTGCGAAAGCAGATTAAATCCAAGTATGGTAAA GAATTTGTCTCTGCAGCTGTTGAATTACGTCCTGACTGTGGTGTAAATCGCTTGTTGGTTGAGAAATTGTCTGCCAAAGCACCTGATGGTCCAACCAAAA TAAAAATGTTGACAACTATCTCCGAAGAGCATAATATCAAATGGGAACCCACGTCATTTGGAGAAAATGTTGGGAAGCCTTCTCAAGAATTGTTGGTTGG ACCAAATAATTTTGAGAAGGCTTCTCAACTCCATGTTTCACCTGCTCATGATGAAAAGTTTCCTCCCGACTTACACTCTTCCTCACAAACTAAACCAATG CACGGTACATCTACAAATTCATATGAGCAAAATGCAAGTGGTGCTACTAGAAAGGTGGATCTCAATCAGTCAACAACGTCAAGGATGTCTGGTCCAGAAA TTAGACCTTCAGGAACCGGAAGTCAAGAAAAAGGTTTTAGAGATTCAAATTCTGGAAATGGGAGTTCATTTTCTATGGGTAGGAAAAAGTGGAATATGGA ATTCAAAGATGCTGCCTCTGCTGCACAGGCTGCTGCAGAATCTGCAGAACGTGCAGCTGTGGCTGCGAGAGCAGCTGCTGAACTTTCAAACCATGAAAGC ATGACTAAGCAACATTTAAGTGGATCAAATAGTTATTCTGGCAGCAGGTTTACAGAAGTACCCCAAGAATATGCTTTTCATGATGACAATCATCTTCCTA CAGGTTCTGTTAAGAGCACATTCCATAGAAAGGGATCTGCGATGTACAACGAACAGATTATTGCCAAAGAACAAGATAATCCAGTAGGAGCTCCCGATGA AAATTACCAGACTAGTCCTGAGAATGTGGTCAAACATGCTCAATCAACTCCATTGTCATCTAGTAGTTCTTTTGGTGATAACCCATTTGCCCATGGTTCT CAAACGGCTGATATATATCAGGATAATAACTCATTTGAGCAAGAGAATAGTGAATTGCATGAAGTGAACATAAAAAAACAGGTAAGCAGAACTGAAATAG ATTTTATGACTAAACCACATGGCGATGATGATTCAAATACTGAAAACAGTTATCACATTGGAGATGCAACACCAATTAGACAATCCATAAAAGCTCCTTT TTCTCACCTCATTTCTCCAAGTGATGAGCATAGTCATAATTTGAACTCATATGGCCAGGAGATGGGGACCAAGGCTGTGGAAGACCTTTTTGTTACTAAT GAAGGAACAACTCAGATAAACACTATAGAAGCAAGTTCTTATAAAGATACTTCCGTTGCATTTGATGATTCTGGATCGGAGGATGGTGAATATAAATTTG ATTTTGATAACGAATACAAGGTAGAGAGATCTAGTTTGTTTTCCTCGTATCATGGAAGCAAATCACATGTTGATCCTTTAGAAAATACAGGTTCATGGAG ACATGGACAAGACATTGATGAGAAAGAGTCAAGTTCTACTCCACAGTCACATTTTTCTGTGGTTCCTGAAAGATTGACCACTTCTGCAGTTTCATCAGAG AAAGAAGACTTGTTGCCTGTCACTTTTGATAATTCAGATGATTCAGGTTCAGATAGCGAGGTGGATTTGGTCAAGTCTATGGTTGCTGGGACTTTTGATT ATAGAAATTCTGTCCTTGATCAGAGTGCAGATCATGAGACTTTAGACTCCTCATCAAAAAATGATCAAAATGTGGGATCTAACATAAAGCCTTGTTTATC ACCATCTTCAGTTGGTTCTGATACTCCGGAAGAACAAGTTGAGAAAAAGGTAGAGATCAATACTATGTTGGATAAAACTTTTGACTATGGTGACTTAAGA ACCAGTCAGCCATTGCAGCTACTTGATACTTTCAAAATTACTGAAACTTCGGAGGAATCCCATACAGAAAATGGTAAGGAATTGAACATTGGAATGTTGA AAGGTGGTTTTCGCAATAAAGCTTATAAGCGGCCACCTTATATTAAGAATACATCAAATGAGAGTTCATCTTCGTTGGGAGATATTTCAGTCCAGAATGA AAGATCCTTTCCTACTGTAAGGACTTCAATCAGTTCTGATAATCCTACCCAGGACAAATATACGGAGGAAGTGAGCAGTGGAAGTAGAAGTGCAGGCTTG AGAAACATATCCTCTGATTGTGATAGTTATGACATGGTTTCAAACACACAAGAGACTCTGACTAGGACTCATGACTTGCACATTCAGAATGAGCAAAGTG AAGAGAAAAAGAAATCAAGCTCAAGGGCCTCAATCACATACTTTGATTCTGATGATAGTGATTCTGAGGATAAACTTGCAAAACAAAATTCAGCTAGTCT CATCCGTCCTTTTACTGGAATGTCTCGAAGGACACCAGCTCCTTCAAAAACTGGTACAGGTTTAAGTTCGAGCAATACTCCTCCATACAAGGCTTCTGTG ACTTCGGGTAAAAGACTTGGATGGAATTCTTCAAGAGATTCTTATGAGAATGATAATCAAAGAGCTTCCTACATGATGGAAGTCTCCCTAAATCGTGGAA GTTCTGAGCCTGAATCAGCTGAACTTGCAGCATCTAAACCAATTCCAGAAGCCAATAGGTCCCCACGTGAGGAAATTATGATATCATCTGCAATGGCGCA ACCTTCGGGTTCTCTTCCTAAAACAGCGATAGAAGATAGTGAAGAGCGCAAAGGGGCTTCAGAATCTGTAAAATCTGACGAAGATATCACTTCAAAGCAG AAGCCTGATGACACTCACCCAAAGCTACCTGACTATGATTCCATCGCTGCCCAATTCCTGTCTCTTAAAAAGGATTGTCAATAGATTACATTTGCTACCC ATAATCTTATGGTTTATCATTCTTTCACAGCCTCTATTGTTACATATAGGTGCTACATGTAACTTGATTAACTCAGTACAGGTTTAACTATTTTTTTGGG TACAACTCTTTCATACTACTACTACAAATTGAGGCAAGGCATGTTGAAAAGATTCTTGTTATCAAATTAAATAATATTATATTAAGATATAATATTGTGG CATTGTGTCCCG
• Tissue: pods
• Gene name: LI_gene_153003;
• Additional information: details;

Expression of Ll_transcript_475514

FPKM

• PAB: 4.2
• PNAB: 2.1
• PS1: 9.5
• PS2: 2.9
• PS3: 3.8
• PW1: 6.7
• PW2: 8.4
• PW3: 5.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_475514

• Blastp: IST1-like protein from Dictyostelium with 38.14% of identity
• Blastx: IST1-like protein from Dictyostelium with 40.11% of identity
• Eggnog: positive regulation of collateral sprouting(ENOG410YG52)
• Kegg: Link to kegg annotations (DDB_G0289029)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020239981.1)
• Pfam: Regulator of Vps4 activity in the MVB pathway (PF03398.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;