| Id Trinity | TRINITY_DN47485_c0_g3_i1 |
|---|---|
| Name Transcript | Ll_transcript_475881 |
| Sequence | CTCATTCTAATTTTTTTAAATTCTCCTAAATTTCCTTCATTTGATTTCCATTTCAATTTAGAAGAGAACACTACTCTCTCTTTCTCTCAAAACACCGTTT TTTCCCTCTCTTCAATCGATGATGAAAATTGAAACTGATTTCTCTTTCGTTTCTTCATAGCCTTAGCCATTTCTCATTAAGATCCATTGGAGCATTTTTT TTAATTTTTTAATTTTTAATTCTTATTATCGGATTTGAACGCTGATCTTCAATTAATCCACTCGTAATTGGTGAGTCTTCGTTTCGAAATTGAATCCATT GATTTAGTTGATATGTTTGAACTGATTGTGACTGATCGCAAATGCAAAATAAAAAATTCGCACTTTATGTATGCGATTCATTCTTTGAATGTTATTTTAT GTTTAATTTTGATCTAAGATTATGTTCATATATTAATAATAATAATTAATGAACGATGAACCAGAAAGAAAATTTGCTTTCAGTGAATAGTTCAATATTT TGTTTATAATTTTAATATTTCTAGGTATAATTGCTTCGTATATTTCCTTTGACATGGTCAAATTTTCATTTGATATTCGATTATGAAGTGAATTCGGAGC CTTCATTTTTTATTTTGTATTTAAATTTCGTTTTTTTATAAAAAAATATGTTGACTTTACTTTTAATTTTTTATTCTCCGATCCTACTGTTGCTTACTTG TTTGGAATAATAATCATTCTCATATAGCTATTCCTTTCATTAAGTTATTAGGAATTATTCTGTTTCAAGGTTAATAATTCTGTTTGTGATTATTCTGTGT ATAACTCAGATCTATTCAATCGATAAGGCAAGTTCTTTTTCTGCTTGTATCTATGCTCTTACTCTTACATTTAGCTATTGCTGATTCTTGTGCCTGCATT TTTTTTCGGGATTATTAAGCTTGGTTTTTTATCCAGTTCTATGTAATCGGTGAGTATTTTGCTGTTTTGAGCTTCTTCTGTAAAGTTTAAGAATCTCTTT ACAAGTTGAGTTTTGGAAGGAAAAGAGAATATCTCGGAGCCTTGAAATACACTTCTGAGATGTCTCTCAAACATTCATTTTCCCTTCCTTCCTCCGAAGG CCCACACAAATGGACCCTAAGCATTGTTTGTGTTGTTTAAGCTAATTGAAGCATGTGCAGTGGTCCAGAGAAATCAAAATCACCATCTTCATCTGCCGCA GAAGGTTCAACTAACTTTGAAGACATGAAAAATCTAACTGTTCATACTGAAGATTCCTTTTCCAGCTTACTTGAGCTTGCTTCTAACAATGATTTTGAAG ATTTTAAGCTAGTCTTAGATAAGGATGCTTCTCTCGTTAATGAAGTTGGCCTATGGTATGTTCGTCAAAATGGCTCTAAACAAGTTGTTCTTGAGCATAG AACTCCTTTAATGGTTGCTGCTACCTATGGGAGCATGGATGTTGTAAAGCTTATACTCTCGTACCCAGAAGCTGATGTAAACTTCTCTTGCGGAGCAGAT AAAAGCACTGCTCTTCATTGTGCTGCTTCAGGTGGGTCTGTTCATGCAGTTGGAGTTGTGAAACTTCTTATATCAGCTGGTGCTGATATCCGTTGTGTAG ATGCTAATGGAAACCATCCTATAGATGTTATAGTCGTTCCTTTTAAGCTTCAAGGCGTGAAATCAATTCTTGTTGAGCTTCTTTCAGATAGTGCATCTGA TGGGTCTGTTGATGACTGCTTTATCCCACCTTCTGTTGGTTCATCAAGTCCTGTTTCAACTGCTCATTTATCATCACTTGAATATGGGTTGCCATCCTCT CCTTCAGGCTCACCACCTTCTCCTGTGGCCACAAAGTTTATTGATACACCTGAGAAGAAGGAATATCCAACTGACCCATCACTCCCTGATATAAAAGACA GCATATATACAACAGATGAGTTTCGAATCTTCTCATTCAAGGTCCGTCCTTGTTCCCGTGCATACTCCCATGATTGGACTGAGTGCCCTTTTGTTCATCC TGGAGAGAATGCTCGCAGGAGAGACCCCAGAAAGTTCCATTACAGCTGTGTTCCATGCCCTGATTTTAGAAAAGGGGCTTGTAGACGTGGAGATATGTGT GAATATGCTCATGGTGTATTTGAAAGCTGGCTGCACCCAGCCCAGTATCGGACAAGGCTCTGCAAAGATGGTACTAGTTGCAATAGAAGGGTTTGTTTTT TCGCTCACGCAATAGAAGAGCTGCGTTCACTGTACGGATCCACAGGTTCAGCTGGCCATTCTCCTCGCTCACCTGCTTCTGCTCCTAATGTCATGGACAT GGCTGCTGCAATGAGCCTTTTTCCTGGTTCGCCCTCATCTATGTCTTCCATGTCTCCATCCCCCTTTGCTCAGCCTATGTTTCCATCTCCAAATGGCATC TCTAATTCGTCTGCTGGTGGTTGGCCCCAGCCAAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGTCGCTTGAGATCTTCTTTTAATG CCCGTGACATGCCACGAGAAAACTTGAATATGTTGCCAGATTTTGATGGGCAGCAGCACCTTTTCAATGACTTGAGCTGTTTCTCTCAGCATCATCCTGG TGTTGGTTCAATGAGTCGACCCGGTCGGGCTAAGACACTAACCCCATCTAATCTTGATGAGCTTTTCTGTTCTGATATTTCTTCATCTCCTCGATATTCT GACCCAGCAGCGGCCTCTGTATTTTCTCCTACACACAAATCAGCTGTATTCAATCACTTTCAACAGCTTCAAAGTACATTAGCACCCATAAATACAAATC ATTTGTCACCTAAAAATGTTGAGCATCATCTATCACAAGCATCATTTGGTGTCTCTTCTCCTGGAAGGATGTCACCAAGAAGTATGGAATCAATTTCCCC GATGAGCTCTCGTTATTCAGCATTTGCTCAGCGTGAGAAACCTCAGCAACAGCTGTGGAGCCCTGGCTCAAGGGACCTTGGTGTTAACACTTCTGCTTCA GTTGTTGGGTCCCCTGTAAACTCATGGTCCAAATGGGGATCTCCTAATGGAAAAGCAGATTGGTCAGTAAATGGAAATGAGCTCGGTCCACCGTCTGGGC ACGGAAATAATGGGGAGGGGCCTGATCTATCATGGGTTCAATCTCTTGTCAAGGAATCTCCACCTGAAATGATAAAGGAGAACTTTGCAGGGTCTGGCCC TATGGCATCTGCTGCTGCGGGAATGAAAACCAATCCTCAAATTGAATCCATTGATCATTCTGTTATAGGTGCCTGGCTTGAGCAAGTGCAGCTGGATCAG TTTGTTGTCTAATTGACCCTTTACATGTTGTTGAGATAGGTATTTAATTTCATGTGGTACATATTCTTTTGGGAAAAAAATTAGGTCCTGTTAAGATACC AAAACAAGGAGTGATGGCTGCAAAGTTCCCAAAGGATATTCTGAATTTTTTGTTTTCATATTTGTCATTCATTATTTTTACTTGATCGACATAATTGTTC ATTATTTACTTCAGCTTCAAGGGGACTAAAGACTTGGATGTTGTTGTTTAGAGCCAAGGATGGCTCTGGACCGATAATCTAGTAAAAAAAGAAAATCATT TTTATGTAAGGTATTTTTCTTCCAAAAAAATGGCCCTTTGCACTTATTTTATTTACCCCTTCCCCACCTATCCCCCTTTAAAATGAAAGCTAGATGGTTT ATATTGAACAAAATCCCATAGTTCTATGTCTTCAAATTTCTTTGTCATACAGTTTGCATTGTAAGATTCTGTCAGGTAATTTGCTGTTTGAATATTTACT GCTGCCTGGTCATAAGATTCTCTATGGATTTCTGTTCTGCTGTTATAAATGGTGCTGTACTGGTTAGTTTCAAATTCAAGGCATTGATTATTTCTTTCTG CAACTTTGGAATTACCTATCTCTCTTGATATTTTTCTTGTATACTTACACCTACTTGTACCAACACTGTTTTTAACATTTATTAATTCTTTGGCATAGAC TGTACGGATTAGTATTAGACGAATCAGCATTTTTTATAACTAAATGAATTAGCATTTCATTGGCACACACTTTATAGTAATTTATGTAACTGAATCTATT TTGGTATGACACTTAATAAATGGATTTGTTTCTTTTTCAAATTAAAATAATCTTATTTGCAGCATATAAGCCCTTTTTATCTTACTGGTCAAAATAGGGG TACCTATATAATGTTAATGGTTTAGCCAATATTAAAATATAGATAATAAATTCATAAATATTATTATTTACATTATATAACTTAATTAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_153038; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_475881
| Blastp | Zinc finger CCCH domain-containing protein 30 from Arabidopsis with 56.99% of identity |
|---|---|
| Blastx | Zinc finger CCCH domain-containing protein 30 from Arabidopsis with 55.45% of identity |
| Eggnog | nucleic acid binding transcription factor activity(ENOG410Y7IC) |
| Kegg | Link to kegg annotations (AT2G41900) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019443633.1) |
| Pfam | Ankyrin repeats (3 copies) (PF12796.6) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |