Id Trinity | TRINITY_DN47485_c0_g5_i10 |
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Name Transcript | Ll_transcript_475903 |
Sequence | TTTGATGTTTTTATTGAATAATGGTAAGATTCACTTCACTTCATAGCTTATATCAGTTTAGATTACTTTCAAGTTTTGGTTTTTCAAATACCCTTTTGTT AAAAGTTAGTATCTTTATGTTTGTATGTGTGTTTTTTCTTCTTGGTTGTTATTGAATTTATATATGAAAATGAGTGTGAAAATTGGTTTTTTGCATGATC CTTAAATGATCTTATTGTTGAACACTTCATACCCTTGTGTCTCAGTCAACGCACTCTCTTCTTTTATTTTTTAATATATTTTTTTGTATATTTTTCTTGA GAGTGTTACATTATCAAAAGCTTCTTTTAATGTATATGATATTGTATATTTTGATGTTCTATGTGTGAATGTTTTTTTTATTAAAGGGGGGCAAAAATCA ATTAGGTTTTTGGTTTTCTGTGAATCTAGTTTTTGATTGAGGAGTTTAAGGATAAAGTTCACTAGGTTGATTTGGTATTTGATTTCATGAATGGTTTGTT TTATTTTATAATTTATTTCTATTTTGTCTTTTGATTCTGATGTTTTTTTGATTAAAAAATGTAGTCTGTTGTTTGATTATTGGATATATGAAGTAAACTT AGGAACCTTGTTTGTTCTAGTTTTCAGGAGAAGATGAGTTCTTTTCCATTTTGTATATTTGTTTGTTCCAGTTGTTTATTTATCAAAAAAGCTGTGAATT TTTTCATTTATAAGTATGAGCTAATTATGAAAAAAATCACTTTTTTGTAATCCTTTCTTTTTCTCTAGTTTACATGTTATACTTGATTCTTTGCTACCTA GAGTATCTCGTAAATTTCATTTGTTTGTTTGTTCAATAAGCGTGTCGTGTAATCAGATGGTGTTTATGCATTAATTTGCTTCGTCGTTCTACTTCTTGTT TGATACAATTTTAGTTCTGCCTTGTCTTCAAATGCTAGCTGTAATGGGTTTGTGTTTTTTCCCCAGCAGAATCTCGTGCTAATGAAAACATGTCCCGTGA GTTGGATCCGTTAAAGCAGCTAGCAACATCTCCAACACTCTCTCCTAATTTGATAAACTCATCTGAACCTAATAGCAACAAGATGAATCACTTGACTATT GATACCGAAGATTCTTTTGCAAGCTTGCTTGAGCTTGCGGCCAATAACGATGTTGAAGGTTTCAAACGATTGATTGAGTGTGACCCTTCCTCTGTAGATG AGGTTGGGGTATGGTATAGTCGTCGGAAGGGATCAAAACAAATGGTCAATGAGCAAAGAACTCCTTTGATGATTGCTGCTACTTATGGTAGCATTGAAAT TATGAAAATGATTCTTTCACTATCCGATGCCGACACTAACCGCTCTTGTGGACTTGACAAGAGCACTGCCCTTCATTATGCGGCATCTGGTGGGGCTGAA AATGCTGTTGATGCTGTGAAACTACTTCTGGCAGCAGGGGCTGATCCGAATTCGGTGGATGCCAATGGGCATCGTCCAGCGGATGTTATTGTTTTCCCTC CCAAGCTTCAACATGTCAAAAACAGTCTTGAACAACTTCTTCAAACTGATGATTCTATTGCTGTCTGCAATCTTAGGGTGATTACAACCTCCTCATTCAA TTCATATTCTCCACCTTTATCAAACTCACCGGAGAATGGGTCTCCTTCTGCATCGGATTTCCAATTGAAGTTGAAGTCAAATGATGTGCCTATTTCTTCT GCATCCGAGAAGAAAGAATATCCTATTGATCCTTCCCTTCCAGACATCAAGAACAGCATATATTCAACTGATGAATTTCGAATGTATTCTTTCAAGGTTC GACCATGTTCTCGTGCTTATTCACATGATTGGACTGAATGCCCCTTTGTCCATCCAGGGGAGAATGCTCGTAGAAGGGATCCAAGAAAGTACCATTACAG CTGTGTACCTTGTCCCGATTTTCGCAAGGGTGCTTGCCGTCGTGGAGACATGTGTGAATATGCTCACGGGGTTTTTGAGTGTTGGCTGCATCCAGCACAA TATCGAACTCGCCTCTGCAAGGATGGGATAAATTGCTCCAGAAGAGTTTGTTTCTTTGCACACACTGCTGAAGAGCTTCGGCCGTTATATATTTCAACTG GTTCTGCTGTTCCCTCACCTCGCTCAAGCACATCTTCGGCCATGGATTTCGCTGCTGCCATGAGCATGTTGCCAGGCTCTCCATCCTCAATGTCCGTCAT GTCGCCTTCACCATTCACTCCACCTATGTCACCTTCTGCTAACGGCATGCACTCTTCTGTTCCTTGGCCGCAGCCGAATGTCCCAGCCTTACATCTTCCG GGAAGTAATCTTCAGTCTAGTCGTTTGAGATCTTCACTCCATGCTAGAGATATTCCTATGGATGACTTTGACTTGTTATCTGATTATGATCAGCAACAAC AGCTCCTAAATGAGTTATCTTGTCTCTCTCCACAGCATCCTATGAATTCTAATAATCTGAACCGCTCAGGTCGGATGAAACCCCTGACTCCTTCAAATCT TGATGACCTCTTCTCTGCCGAGAGTTCTTCTCCTCGATTTGCTGATGGTTCACTGGCTTCAACTGTTTTTTCTCCAACACACAAATCAGCCGTCTTTAAT CAGTTTCAGCAGCATCAAAGCATGTTGTCGCCTGTGAATTCTAATTTTTCTCCTAAAAATGTTGAGCATCCTTTGTTGCACAGCGCCTCTTTCGGGGTTC AGTCACCAGGAAGAATGTCCCCACGAAACATGGAACCTATTTCTCCGATGAACTCTAGGATGTCTATGCTAGCTCAGCACGAGAAGCATCAACAATTTCG TAGCCTTAGCTCCCGGGATCTCGGCTCCAACTCTGCTACGGCTGCCTCAGCCAACTCTTGGTCAAGGTGGGGATCCCCGAATGGTAAGGCAGATTGGGCA CCTGGTGCAGAGGAATTCAATAAGCATCACCGCAGATCATCTTCTTTCAAGCTCGGGAACAATGGCGAGGAGCCGGATTTATCATGGGTTCAATCACTTG TCAAAGAATCTCCAACCGAGATTAAAGAGAAGTTGACCACCAATGTCCCAACTGTTGCAGCAGCTGGATCCTCGAGCGAGGGGTCAAACATAAGCGCATC ACAAATAGACTCAGTGGATCATGCTGTCTTGGGAGCATGGCTTGAACAGATGCAGCTCGATCATCTCGTGGCTCAGCAAAACTGAAACGAGTTTTACTGA CGAGGCAGGTAACAACAGAAAGGGTTTCCAGTAAATAATATATCCATGCTTTTTCGAAGTTTTGTTGATGGCGGGTTTCGGGTACTAAGAAAAAAAAAGC AGTATGAAAAAAGAATCACCTGAGTTAAATTCATTTTCATATTTAGTTTTTTTTTTACTAAAGTAACTTTAGCATTCACATTCCTGTCATTTTTTTTCTT CCATAAGGAGCAAATGTTCTATAAAGATGAATTCCTATTCCTAAGTTTGATTTATATCTTTCTCTTTTAATTTTGACATTTGGGTAGAAAGACATTACAA AAGGGTCATTGGAATTAATTACTTTGTCTCCATTTTGATCCATTTTTGGGGATTGTGATATTTCTGATATAATCAGGAATCAATAATTGTGGATGACAGG GAGTGGATAATTTTTTAGGACTATTTGAAGGTTGATCTTTTTGGTCATGTATAACATTCAATTAAACTTTATTCCTATTTTATTCTATAATACCTTTATT ATTATTATTATTTCTATATTCAAGCCTATCTTTCTTTCACATTGTTTTCTATTGTTGTTAATATTATATTTTTTTGCATGAATGAGGTATTGAATCCTTT TTATGGATATGGTACTATAGTTTGTGCATGGATTAAATACCATTATAATGATTCTTTGTTTTTGCATGATGGATGAAACACTATGTTATTTTATCTTTGA TGATAAGTGATAACTTTGGCATTTACAATTATTGGCATCCTACTCGATCAGCATATTATTATTGGAGTGGTATAGATCTGTTATCTTTGCAAGCAGATAA GTTGTTTCGAGC BLAST |
Tissue | pods |
Gene name | LI_gene_153040; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_475903
Blastp | Zinc finger CCCH domain-containing protein 30 from Arabidopsis with 62.57% of identity |
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Blastx | Zinc finger CCCH domain-containing protein 30 from Arabidopsis with 58.12% of identity |
Eggnog | nucleic acid binding transcription factor activity(ENOG410Y7IC) |
Kegg | Link to kegg annotations (AT2G41900) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019456087.1) |
Pfam | Ankyrin repeats (3 copies) (PF12796.6) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |