Ll_transcript_477213

• Id Trinity: TRINITY_DN47495_c2_g1_i1
• Name Transcript: Ll_transcript_477213
• Sequence: AAATAACAATCGCGTAAAACCCCTCTTCTTCCTCCTCTTCTTCTTCACCTGCTTTCTCTCCACTGCTGCTATTCTCTTCTCTGGAATTGCGCTCAAAATT TAAATGTTCAAAACGCATCATGTCAAACTGTGCATAGTTGTAACAAAAACAAGGGTTTCTGTAAGGTAAATCACTCCACCAAACTAGACCATGAGACAAG TTGTAGATTCCTTACCAGTCTTGCGCTCCCATGGTTACTATACCAAACCATCTTTGAAGGAGTTAGCTTCGCTTGAACTCGTTGACCCTGGTTATTGCAC TCGTGTTCCTCATTTCACTGTTGGAAGGCTTGGCTATGGATCTGTCACATATCTTGCCAAAACCGATGTTCGAGGCTTAAATCTCGATGAAATTGTCAAG TTTCATAAGCATGAGGTAGTTGTATATGATGATGAAAATGATAAGCCTGAAGTCGGTATGGGCCTTAACAAGCCAGCTGAAGTGGTTTTGGTGCTAGATA GTGGAATATTCAACTCTAAAGACGTGCCAGTCCAAAGATTGAAACAATGTACTGAGAGGCAAGGAGCAGAATTTGTTTCCTTTGACATATCAACTGGTGA GTGGAAATTCTTAGTTCAACACTTTAGTAGATTTGGATTTGGTGATGATGATGATGAAGGAGACATCACTATGGATGATGCTGAGATACATGATGTTCTG AAGGAATCTCCTACAAATGCCAACGGGATTGAGCTTTCTCATTCTCTTCCTGCTCATCTTAGGCTTGATCCTGTTAAGACGAGAGAAATGAGATTGTTGA TGTTTCCTGATGAAGAAGAGGCAGAGGACTTCGGTCAAAAATCATCTTTCGGTAAGGAGTCTGTAAGGCCTTCCCACAATTCCTCTCAGGCAATGAACCT TAGATCCACTCCACCAGTTGCACGAAAAACGCCATTTCCATTACTTGAGTATAAGCACGGGAGTTTTGAATCGAATTCTCCTGGAGCCATTTTAATGGTC CAGCAGCGTAAGGGCTCACCTCTTAAGACAGTTAAAACACAAGGTTTTAAGCTAGACCTCAAGCATGAAACTCCAGTATCCAGAAACTATGCCCGTAATA TAGTTGATGCTGGTCTGTTTATGGGCAAGTCGTTTAGAGTTGGGTGGGGACCTAATGGCATTCTTGTCCATTCTGGTGCACCTGTAGGAAGTGGTAGCGA CCACAGGCTATTATCATCAGTTGTCAACTTGGAGAAAGTTGCTTTTGATAATCTGGTTAGAGATGAAAATAAAAAAGTGAGTGAGGAACTTATTGACCAT ACCCTGGTTTCTCCGTTAAATTTTCATAAAGGATTAAACCATGTGATGAAAGGTGTTGAAATTGGTCCTTGCAAGCTGACACTTCAAAAGCTTGAAGCTA GTCGTACAGCCCTGTCAGAGATTTCTCATGGGTACTGTGATATTATTGAGAGGCAAATGACTGTTCCTGAGTTATCTTCCTCTACCCGATTGGGTTTGAC ACATCAAGTCATGACTTGGGAATTAATTAGAGTTCTTTTTTCTGAAAGAGAACCAAAAGGTCAAGTAGAATCTTTGGGCGCTGACAATGAAGAAGATATG ATGCAGGATATGAAAGAAGCTTCTCAAGATGTTGAACCAGAAGCACTCCCTCTTATGAGGAGGGCAGAATTCAGTTATTGGTTGCGTGAGAGTGTTTCCT ATCATGTTCAAAATCAAATAAGCTCTCTAAATGACTCTCATTATCTACAGCATATTTTTGTACTCCTGACTGGACGACAACTGGATGAAGCAGTACAACA AGCTGTGTCCAAAGGAGATGTGAGGTTGGCTTGTTTGTTGGGTCAGGCTGGTGGCTCTACTGTGAATCGCTCTGATATTGGAAGGCAACTTGATATTTGG AGAAATAAAGGGCTGGATTTTAGTTTCATTGAAAAGGACAGGTTGAGACTGTATGAATTACTCGCAGGAAATATTCATGATGCATTGCTTGGTTATTCCA AACTTGACTGGAGGAGATTCTTAGGCTTGTTGATGTGGTACAAGTTACCACCTGACACTTCACTACCCATTGCTTTTCGGACGTATAAACATTTTCTTGA TGAGGGAAGGGCCCCATTTCCAGTTCCACTCTTTATTGATGAGGGAACATCAGAAGAGGCTATCAGTTATAGCGCTGATAAACACTTTGACATTTCATTT TACCTCATGCTTCTTCATGCTAGTGATGAGACAGAGTTCGGGTTTTTGAAAAATATGCTTAGTGCCTTCTCCTCAACCCCTGATCCACTTGATTATCATA TGATCTGGCATCAACGTGCAGTCTTGGAAGCAGTGGGTGTTATCCATTCTAATGATCTTCATGTTCTAGACATGGGGTATGTGTCTCAGCTGTTGTGCTT AGGGAAATGTCATTGGGCCATATACGTGGTCCTTCACTTGCCTATTCGCGAAGATTATCCATATCTTCATGTGAATCTGATTCGGGAAATATTGTTCCAG TACTGTGAAATATGGAGTTCAGATGAATCTCAATACCAGTTCATCGATGATTTAGGCATTCCCCCAGAATGGATGCATGAGGCTTTGGCTATTTATTATA GTTATAATGGGGATCTCTCAAAAGCCCTTGAGCACTTTCTTCAGTGTGCAAATTGGCAGAAAGCTCATACCATTTTTATAACTTCAGTTGCTCATAAGTT ATTCTTGCAAGCCAAACACACGGAGATCTGGAGGATTGTGACTGCCATGGAGGATCATAAATCTGAAATTGAGAATTGGGAGTTGGGAGCTGGAATTTAT ATTTCATTTTATTGGATGAGAAATTCACTTCAGGGGGACACTAATGCCATGAGTGAATTGGATTCTCTTCAAAGTAAAAATGCTGCTTGTGAGGAATTAG TGAGCCAGCTAAATGAATCATTGGCTTTTTGGGGTAGCAGATTACCTGTTGATGCAAGGGTGGTGTATTCAAAAATGGCGTCGGAGATGTGCGATTTGCT GCTATCTGCTGTAGGTGAGGGTGCTACTCGTGATGAGCAGTTTAGCTGCTTTAACACTGCTTTCAGTGCTCCTATTCCAGAAAATCTTCGCTCTGGTCAC TTGCAGGATGCACTACATCTCTTTACCAGCTTTCTCTCTGAGATTGCTACATAATTCCACAATCTGCTCTCAGGGTTTTAAACTAAAATCAGTGAAGAAC TTCGATTTGCATTGCTGCCGGGGATTTTGATCTGCTGTGCTCTTTGAATCTGTATCATTTTATAGTATAGTCTTTCATGGGAAGTTGGAGATGCTGCTAA ATATGATCATAATTCATAAATGTTGACTACATGATCATAATTCATGTGAGTCTGTATTTTTTTTCCTCCTAATTTTTCATTTCTCCTATCATTAATTATT TTACACCACTTGCATGAATCTAAAAACATTAACTGAAGGTGTGACCGTGGGTTGAGTTTTAGATGAGTTCGAAGTTAATGTATTTCATGGCTCTAAAGAC ATCCTTTTATATTTGTCCCAAAAATATAACTTGTAAACATACCCTAAGAGTAAAATTAATAATTAATCAAC
• Tissue: pods
• Gene name: LI_gene_153105;
• Additional information: details;

Expression of Ll_transcript_477213

FPKM

• PAB: 5.1
• PNAB: 18
• PS1: 13.9
• PS2: 10.2
• PS3: 12.3
• PW1: 12.4
• PW2: 11.4
• PW3: 8.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_477213

• Blastp: Nuclear pore complex protein NUP96 from Arabidopsis with 58.65% of identity
• Blastx: Nuclear pore complex protein NUP96 from Arabidopsis with 57.69% of identity
• Eggnog: nucleoporin(ENOG410ZXB8)
• Kegg: Link to kegg annotations (AT1G80680)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019435752.1)
• Pfam: Nucleoporin autopeptidase (PF04096.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;