| Id Trinity | TRINITY_DN47509_c4_g1_i20 |
|---|---|
| Name Transcript | Ll_transcript_526002 |
| Sequence | CTTGTCGAGTGTTAAGGTTCCACATAAGAAGAGTAGCCAACAAGTATTTAAATAATCCGAGACAATGAGCTTTGGGATGTGAGCTTAGGGTTAACTTTGA CCCATAACTAAAGGCCATTTCAACACAACCGGAAAAAAGTTGGGCAAGAAGTTGGACTCTGGTATTTAAACCATTCGTGAGACAATGAGGTTTCTTGTGG ATGTGAATTTGAATACAACACAATCGTAATTAGCTTCATTGATAGAGAATTTTTTTTTTCTTTTTTTACTTATGAGTTATGATGTATGCTGGAATGTTGA AAACTGAAATATCTTTGCATTAATGAAAGATGATGACTTTGTAATATGAATTTAAGTGGATATGGGTGTTTCTGGTTCATTAGATTTGATTGGAGGGGCG AATAACATGGGATTTGTATTTTGTGCTTTATGTGAAGTGCAAACAAAGCTAGGGAGTGACACTGGGTTGGCTTCTAAACATTGCTAAGTGTTATTCTGCA TTATCTATATGGGATTTTTCGTCACCCAAAAATTCTCAATTTTCTCTGAATTTTGCTTACCAGGATCCACAGAGCAGATAAAGGATGCCCTTGACTTTTT CACTGGAAGGTCAACTTTTTGAATAATTAATATTTGCTCTATTAAATAAAATTAAATCAAGTCTAGTCCATTTGATTTTTGGAAATGAGAAAGGATATTT AGGAGTGTCTTATTAAGTTGTGCACTTTATTCATTTTGTTTACTTTCAAGTTTCTGAGCACCAGTTGAAGGATTAAATATTGCAGACTAGGAGATGTGGA ATTTGTGGTATGCCGAGATGAGAGTGGGAAGGTTCGTGCCTTTCACAATGTCTGCCGTCATCATGCCTCTCTTCTTGCTTCTGGAAGTGGACAGAAATCG TGCTTTGTATGTCCTTACCATGGGTGGACATATGGTTTAAATGGAGCACTTCTTAAGGCAAATAGGATATCAGGAATGCGGGATTTCAATGTTAAAGATT TTGGGCTTATACCAATCAAGGTAGCTACCTGGGGGCCTTTTGTTCTTGTCAATCTTGAAAAGGAGAGTCTTTCCCAGAATGAAGTTGATAGTCACAATGT TGCAAGCGAATGGCTTGGTAGCTGTTCAGAAATACTGAGTACCAATGGAGTTGATTCTTCACTAAGTTATGTTTGTAGACGTGAATACACTATTGAATGC AATTGGAAGGTATTCTGTGATAACTACTTAGATGGTGGCTATCATGTGCCATATGCACATAAAGGCCTAGCATCTGGTCTTAAGCTTGATTCCTATTCTA TCTCAATGTTTGAAAGGGTTAGCATCCAAAGTTGTGAAAGCAACTCCGGGAAGAGCGAAGAAAATTATGACCGACTTGGAAGAAAGGCTATATATGCTTT TATTTATCCAAACTTCATGATTAATAGGTATGGACCTTGGATGGACACCAATCTCGTACTTCCACTAGGACCCAACAAATGTCAAGTAGTATTTGACTAC TATCTTGATCATTCTCTAAAGGATGACAAAGATTACATTGAGAATAGTTTACAAGATAGTGAAATCGTGCAGGTACAAACATTAATTTCGTAGATTTGGC TAGAAATTCCCGGAGTAATTTATCTGTCGTTCATTTGCAGATGGAAGATATTGTGCTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_153246; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_526002
| Blastp | Choline monooxygenase, chloroplastic from Arabidopsis with 61.95% of identity |
|---|---|
| Blastx | Choline monooxygenase, chloroplastic from Arabidopsis with 65.43% of identity |
| Eggnog | rieske 2fe-2S domain-containing protein(COG4638) |
| Kegg | Link to kegg annotations (AT4G29890) |
| CantataDB | Link to cantataDB annotations (CNT0000705) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019463425.1) |
| Pfam | Ring hydroxylating alpha subunit (catalytic domain) (PF00848.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |