| Id Trinity | TRINITY_DN47522_c1_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_526808 |
| Sequence | GCCAAATTCACAAAATAAACTCCGCAAACGTAAACCTTTCTCTCTTTATTTATTTCTTCTTCTTTCTTTCTCTTCTTCCTTTTTCTTCTATAACTCTACC TCTTACGCTTTCACTTTCTGTCGTTTTCCCAAATACGACGTCGTTTCAACCGTTCCCAATTCCCTGACATTGTTTCCTCTCGGTTGGTCAGTAGGGGGCA ATGAATAGCGTGTTCAGCGAGCAGATACTTGCGGATAAGCTGTCCAAGCTTAATAACACTCAGCAGTGCATTGAAACTTTATCACATTGGTGTATATTTC ACCGGAGCAAAGCAGAACTGGTTGTTGGAACATGGAATAAACAATTCCACAATTCAGAGATGGTTCAGCGAGTCCCCCTTCTGTATCTTGCAAATGACAT TCTACAGAACAGCAAACGTAAAGGAAATGAATTTGTGACCGAGTTTTGGAAGGTTCTTCCAGCAGCAGTTAAAGATGTTTTTGAGAAAGGTGGAGAACAA GGAAAGCGTGTAGTGTCTAGACTGGTTGATATATGGGAGCAGAGGAAAGTGTTTGGATCTCAGGCGCAGAACCTTAGAGATGTAATACTCGGAGAAGGAG CACCTCCACCATTGGAGTTCAATAAAAAGCGACCCCGTTCTGTAAAAATTATGAAAAAGGATTCTCGTTCCATCAAAACGAAATTATCCATTGGAGGTAC AGCAGAAAAAATAGTCTCGGCATTTCATACCGTGCTTAACGACCATTCCAATGAAGATGCAGAGATGAGTAAATGCAAGTTAGCTGCTCATCGTGTGAGG AAGATGGAAAAGGATGTTGATGTTGCATGCGCTACTGCAAAGGACCCTAAGCGAAAATCTTTGTCCAAGGAACTAGAGGATGAAGAAAATCTTTTGAAAC AATGCATTGAAAATCTTAAATCAGTTGAAGCAAGTAGAGCAGAGCTTGTATCTCGTTTGAAAGAAGCTTTGCGTGAGCAGGAATCTGAACTGGAGAATGT TCGCACTCAGATTCAGGTCGCACAAGCACAAGTAGAAGAGGCTAGCCACATGAGGGAGCGACTTGATAATGAAGATTCTTCATATAAATTGTTGACTGCA ACGACTTCAATTCCTGAGGCAAATACAAAATCAGAAGCAGTGACTAAGAAGTCAGCTGCAGCAATTGCTGCTGAGGTTGCAGACAAGCTAGCTGCTTCTT CGTCATCTCAATTAATCATGTCATCTGTTCTCTCAACATTTGCAGCAGAAGAGGCAAAAAATGCTGGTCTCACTTCCGAATCCATGTCAAAACATGAGAA GTCAATCACTATGTCAGATCCCAATATTTTTATGTCCACACAACAGATGATGGCCACTCCAAATCATTCATATCCTTCAGTTATACCCCAACAAACCATG CAGAATTCAGCTGCTGCTGCTGCTGCATCCCAAGGTCAATATCACATGCTCTATAATCCATCTTCCCAGCAATATTTACAGTCAACAACAGGAGGGATCA TCACCCCATATGGTTATGGTAATATACCGCCATTGCCACCGGGGCCGCCCCCACCGCATATGGTGGGGCCAATTTTGCCTCAATCACATCAGACACTGCA AATTACTCAGCAGCAGCCACAACCATCAAGTCAGCAGCATCTACCAATACAAATGACACAGCAAGGTCCAGCACCTCCTAGTTTTCGACCACTTCAACCA CCCGGAATTGTGTACTATGGTAATCATCAGCATTCTATATAAATCTGCTGTAGTGTGAGTTATTTTAACATAAATTTTGATGGTAATGTATTTGTATATA ATTGGATAAAAATAATTATTGGATCATATTCATGCTTACAAAGACTGATCAGGAAAGGAAACCAATTGTTGTCAGGCTTTTACTGAAGTGTAATAACCCA CCAATTACATGAAAGAAATTCAGCTATTGATTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_153329; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_526808
| Blastp | Regulation of nuclear pre-mRNA domain-containing protein 1B from Mus with 41.91% of identity |
|---|---|
| Blastx | Regulation of nuclear pre-mRNA domain-containing protein 1B from Homo with 41.91% of identity |
| Eggnog | Regulation of nuclear pre-mRNA domain containing(ENOG410XRAP) |
| Kegg | Link to kegg annotations (70470) |
| CantataDB | Link to cantataDB annotations (CNT0000580) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019462359.1) |
| Pfam | RNA polymerase II-binding domain. (PF04818.12) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |