| Id Trinity | TRINITY_DN47545_c0_g1_i15 |
|---|---|
| Name Transcript | Ll_transcript_525273 |
| Sequence | GTTGATTTATATTATTTTTATTTGAGAGTCATTAATAGTTATTCTACCACCTTTCTCCTTTTTGGAAGAGAATCTTCTTCACCTTAAATTAATATACCCC TACTCTTTAAAAAAATCAATTACAAGTCTGGCTTCCCTTTTCTAATTTGACCTCAATCTTTCCAATTTTGAAGCTTATGTGTAAAGAGAAATTAGATAAT TGATTTATCTGTATATAGTGGTTTAAGATTATTAAAGCAGTTATATAATAGAATGGGCCATTGGCCCAAAACAGGTGTCGCTGTAGATATAAGTAACGAA TCGAAAGTTGAATGATTGAATTAATCGAAATTGAAAATCATCATCAACATCGATGGATCTGGAGGTAGTTGGGCGTCACGCGATGCTGTTCGACGATGAC AGCTTGGCGGCGTTTGTGAACTCACCTTCTGCTCTCGTCGATTGGAACTCTCTCTCTATTGATCGCTACGATGTTCGCCACCTCCTCCCTTCTCCGCTTC CACCTCGCCGCCATCTTCACCGCCCTTCCCTTCAACCTTACCTTGACCACGAACGCTATCTCTATCTCCCTTCTTCTTCTCCCAACCAACAACCACAAGG TTTAACCTCTTTTCATCTTTTCTTATTATTACTTATTTCGTTTATAGCTTGTCTTTTCAAAACTATTACTTATTTCGTTTATTTACTCTCAAATTTTACT TACCATTACGTAGATGCGATCATTTTGGTTTATGATTTTTTGTTTTATGAATTGTTGAAGGTAAAGGCTTTTAATATTTAAGGGAGATATGTGTGATTCC TCTGGATAGGAGGGAGGGGTGTTGATTGTAATTAAACTGAACATTAAGGGGTATATGTGTGATTCGCCTAATAATCTTCAAGTAAATATGGTTTACCAAG TTTGTTCAATTTGTTTTTATCATTTGAACATATTAGAGTATTTGGTTAAGGTAGGATATGACATTTAGTTGAGGAGACTAGGTGATGATGGGTAAATTGT GTGTTTTTTCTTTGTGCCACAACTATCTCCACACTTGCAGGATGGAAGGTAATTCGCTACGGTTCCTGTGTCAGAATACAAGTAAGGATGTTTTCGCATG GCTTCCATTTTCCTTTAGAATCTTCTGTCAATGTTAGTGCCGATACTGTTTGATGTGTATTATATTGTTGCAGTTGAGAATTGTATGTGGTTCTAATGAT AAATATCATCTTTCTGTCTTTGTTTAGATGATGGTTCAGATCCAGTGATCTCGGATGGGGATGGCTATCGTGCTGTTCCGTTTAAATATGCAAATCCTAA TGACCCGGCTGAGACAAGAGACAGTGATACGGAGTCTGCATATCGTCCTCCCTTCCCTGTACCAGAAAGATTACTCCATAGTCTGGTTAGTGACCTCAGT CTTAACATTTATTTTCGTCGTGTGATTTTCAGATGTTACAGATTTATTTAACCTTTTAATTTCTTAACCAGTGTGATTAGGTGATAATTGTCTAGGGTGC ATATGTTATTCTAAGGCTTACAATGTCTAAGTTTCAGATGCTTGGAGCATAAATGGAGTTCTTGTGACTCAAGGTAGCCATTCTCAGGCACCTTGTTTCC TTTTGATGTCATGAGAAGGGTCTGTGCAGGTTGGATTAGGATGATAGAAATTGGTTGATTCTTTACCTCGAGAGCAAATGGGATGAAATTTATCTTCTTA AAGTCCTGTTTCTTGATCTTTATGGTTATGCAAGTATATTTGAGCCTCCAAACGAGAAGGTACATCAGATTATCTCAAGGACTGCAATTTTTGTCAGCAA ACATGGAAGCCAGTCAGAAATTGTCCTGAGGGTGAAACAAGGAAACAATCCAACATTTGGGTTCCTGATGCCTGATCATCATCTTCATGCATATTTTAGG TTTCTTGTTGATCATCAAGAACTTTTGAAAGGTGACAAAGATGATACCATCGGCAACCCATCTGTTGACAAGAATAAAAGTCAGGGGCTTGACCAAACAG GTGGTGCATTGTCTTTGCTTGGATCAGTTTATGGATCTGGAGAGGATGAGGATGGTACAACCGATAATACTCATGACTTCAAGAGAAACGAATGTGAAGG AGCTGTTGATGCTGTTAGTGCTCATGATTCTGCAGGAGTAGAACCCGCAGAGTCATCTCCAGATGCAGCCAAGAAGGATGGAAGCATTTCTAGAAGTCCG ATATCTTCGAAAGAAAATGTTCCTGTCATTAAGCGGAACCAGCCTATCAGTACTGTCAAGGCAGCAATCGCAGCTAGGGCAAAAACAACTGATGCATTGG ATTTAGTGTCTAATGTGGTAGACAAATCACAGGTTTCTGTGCCCAATAAAGTTAAGATTGAACTACCCGTTGTGGAGCCCCCATCTAGCATAAAGGAAGT TATTGAGAAGGTGGTTGAGTTCATTTCAAAAAATGGAAAACAATTTGAGGCTGTTCTTGCTGAACAGGATCGTGCTAATGGAAGGTTCCCATTTCTTGTG CCGTCTAATCGATATCATACCTATTATCTGAAAGTTCTTCAAACTTCTGAAGATTCTAAGTTACCAGGCAAGGGCTTGCAAAGGCACAATTCAGCAGGTC GTTCAGGGGACAATAATTCTATTGCACACGAAGAAAGTGATAATTCTTCATTTGGATCTGTGAGCTCTGATATACCACATGATATGGACCGCAAAGAGAA GTTTAAGTCGATTGTCAGAAAGTCGAAGAAGGATGGTCAAGATGCAACTCCCGAAGACATCCAAACTCAGACCATGGTGTGCATGGATGCAGCAGCAGCT GCTGCTATTCTTCAGGCTGCCACTAGGGGTATTAAAAACCCTAATTTAGAAATATTTAGCAAGACATCAAGTGGTAGCAGTCAAGGCCTTGGAAGTTATG TCAAAAGCCCAAATCTGAATGCAGAGGATAGTGCTTCTGTCCCTGTTGGCAAGGCTATTCGAGAAAAGGTCAATATTGCTGTAGCAGGTGAGGCAGACTC CTCTGAAGCAAATATGACTAAAGAGAAGATTAAGGCAGAGAGACTGAAACGAGCGAAGATGTTTGCAGCCATGATAAAAAGCAGAGCTGAGCCACTCAAG AGTGAAGTCCCACGTGGTTTATCAGTTGAGCCACCAGGCTATGGACTTTCAAGTTCAGATGCTGAGACTGGGAATCTTATGGGTGAAGAAAGAAAAGGAA GTTCTGTTCCACTAGATGTTGATAATTCAGATAAAAGTCAGAAGTCTGAGGAGAAACTTTCTGTTGATAAATCAAACGAAAGTCACAAATCTAAGGAGAA ACTTGCTGTTGATAACGATGAACGGCGGTCGAAAAGAAAGTACCGTTCAAGATCCAGTAGACATGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGTGGCG GCGAAGATGGAGGGAGAAAGAAGGAGGCGATATTGGTATTGGCAGAGGCAGGGAGGTCAGTGGAGAGTTTGCCAGGTGACTTGGCGGCGGCCGTAAAAGA AGGGAGGATCGGAGGTGCGGTGGTGAGTCGGTTACTGGAAATGGAGAAATCAGCGTTGTTGAGATGGTTACTTCAGTTTGGTGGATTCAAGGAACGTCTT CTCGCTGATGATCTCTTTCTTGCTAAACTTGCTATGGAGTGCGGTGTTGGCGTCTTCACCAAGACTGCTGCTGAGTACGACCGCAGGAGAGACAAGTTTT TTGATGAGCTGGAAATTGTTTTCGCTGATGTGGTCATGGCCATACTTGCAGATTTCATGCTGGTTTATCTTCCGGCACCGACTGTATCTCTTAGACCACC ACTTGCAATCAATGCAGGCCATATAGCCAAGTTTTTCCACAACTGCCCAGATAATGCATTCCAGGTTGCTCTCTCAGGAACACCATATTCCTTATTACAG AGAATTGGTGCTATTGTGCGTAATGGATCTAAGCTTTTTGCTGTTGGAACTGCTTCATCCTTGGTTGGGACAGCTGTGACAAATGCCTTAATTAATGCAA AGAAGGCTGTTGATAAATCTTCTGCTGGGGAAGTTGAAAATGTTCCCATATTGTCTACCAGTGCTGCCTATGGTGTTTACATGGCAGTTTCTAGCAACCT CAGGTATCAAATTGTTGCTGGAGTTATCGAACAGAGGCTTTTGGAACCTATGCTGCATCAGCACAAGCTTATACTCAGTGCAATGTGCTTTGCTGTTAGG ACTGGCAATACCTATTTGGGTTCATTATTGTGGGTGGATTATGCCCGTTGGATTGGGGTCCAGTAGGGCCAAGAGTACAAGACTTTTGCATAACTTTTGT TGATTGAATACAATTTTCTCAACATTTCCATTTGTGAAGAAGTTCACAAATGGAGCATCACAAAACAATTTATTTACTTGGTAGGGTTGATTTGTAAGAT TAGCCCATTACTTTTTCGTTGTTGTTGAGTACTCTGCCTATTGTTTTTCTCACAACTTTCCTCATTCAAATAATGTTACTAGGATGTCAAACATAATTTC AAACTCAATGGAAGTTTGCAGCAGATTGAATGAAATTTAACTATTTAAGAAACAAGTTATCTTTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_153472; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_525273
| Blastp | Pre-mRNA-splicing factor sap114 from Schizosaccharomyces with 35.38% of identity |
|---|---|
| Blastx | Protein RETICULATA-RELATED 4, chloroplastic from Arabidopsis with 79.43% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (SPAC22A12.09c) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019456009.1) |
| Pfam | Surp module (PF01805.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |