Id Trinity | TRINITY_DN47563_c1_g1_i12 |
---|---|
Name Transcript | Ll_transcript_526490 |
Sequence | GAAAGAAAAAAACTTTCCTAGCAATTGTGAACTCTAACTCCAATTCCAAACCCTAAGAATGATCGAGAAAGATGAATGTGAGAAATCAATGGCGAGTTAC CTGATCCGCCACCACTCCAACCAGCTCCGCTCCATCGCTTCCTCAGCAGACCCCAACCTCCACTTCCCTCTCTTCCTCGATTTCGCTGAATTCATGGCCG ATGAGCCTCACATCGCTTCCCTCCTCTTCTTCCATCCCACTACCTACTTCCATCTATTCGATAATGCTGCCCTATGGGCTCATAACATTATCTTCTCTGA ATTACTAGCAACTCATAATGATAACAATGTTGTTGAAAAGAAATTCATTCATGTTCGTGTTAACATTTTTGGTTCTCCCCTTGAATGTCCTGAGACATTT CCAAGCATAGGACGAGTAAGAGTGCAGCACCATGGAATTCTTCTTACTCTCAAAGGGACTGTCATCAGGTCCGGAGCTACCAAGATGCACGAAGGTGAAA GGAAATATATCTGCCAGAAATGCCAAAATAGCTTCACAGTTTATCCTGAGGTTGAAGCTCGGAACTCCATACAATTACCTTCAATTTGCCCAACTCGGAA GGCTAAACCCTGTGGAGGCACCAAATTTCAGTTTGTAGAAAATACTATAGTATGCCATGATTATCAGGAGATCAAAATCCAAGAAAGTACACAGGTGCTA GGTGTTGGGGCAATTCCTCGTTCAATTCTTATCATCTTGAAAGATGACCTTGTTGATGTTGTTAAAGCTGGAGGTATTTAGATTCATGTCAATTTTCACT CTCGTTGAATATTATTGTGTGACATACATGTGGTATTTTATCATGTGTCCTGGTCTAGGCTTATTAGTATTGAAAAAGTAAAGACTGCTAGCAACTTCCA AGTTAAGCAATGCATCCTGGGATTTTCTTACCATGGACTAGAAGACAATTACTCTCCTTCCATGTCAACCTCTGCCTTATGATTTTGGACTTTTCAGTCT TTGAAACTCTTACTGAAGTTAAGTTTTTAATATGGGGGATCTCTCGTTATTCGTATATGTTTCTGTTATAAGATGGCTTGAATTTGATTACGAGCTCGGA CATATGACCTGGCTTGAAAATGCAGTGATTGTAGAGATTAGTGTGGGACTCTGGTCTCAGGCCAGTATGGATCTATTCACAGGAAAATCAGAAGTTATTA ATCATGTTGCAGGATGGAGTTTGAAAGTTGAGTGGCTACTCACCTTCATTGGTCATATATTTTTGTGTCTGTGGATGTAAGTCTAGTATACTTAAGTCAA ACCATGATAATTTCCATGTCTACACCCTATTTTCAGTATTCTTCCCTGGTTAGAACTGTTTGAAAGCAAACAGGAATCCTTGTTATTTGTATATTTTTTG ACTCTATCCAGGACTGGATCTTTTGGGCATAGGATTTTAGTTTTCAGTAGAAAATCCAAAGTTTCTGGTAGTAGTTTACAATAAGTCTGATGGTCTGTCA CAAGCTTATGCTGTACTGCTGGAGGAGAATATTGGCAACTGATTTTAGATGATGTGGTTGTCACTGGTCTCTTAACAGCAAAATGGTCTCCAGAATTGAA GGATGTGCGCTGTGATCTTGATCCTGTTTTAATAGCCAACAACATAAGGAGAACCAAAGAACTGAAGTCAGAAATTGATATTTCCGATGATATTGTTGTG AAATTCAAGCAGTTTTGGGACCATTTTAAAGATGCACCTTTAAAAGGTTGTATTCTGATAGCATGTCTTTGGTATCTCTTATTGAATTCATATTTTTGAG CTTTTTGTGACTACCTCCCCCAATGTTGTTGTTTTATATTGATCATAGTAGACTGGACTGTACAACACCAACACAACATAGGACCTATAATGTTTGGTCC AACTCTGTCTACTCCCCTCACCCTTCAGAACTTGGTTAATGACTGTAAAAGTTGTTTGGGAGGTTGTGATTTATGAATTATGTTCCTTGAGATGAAATTT CAGAGTTGTTAAATGGTCCAGGGAGGAATGCTATTCTTCGAGGAATTTGCCCACAAATATTTGGTCTTTTCACTGTCAAGCTAGCTGGTATACACATACA TCTGAGGTTATGTCTATTTACATTACATATTCATTCACCTTGAATTTAAAGTATACGTTTGTTACTTGCTGTTCTCTTAAGGATTTGCTTTAACATGTTC TCTTGTTATTATTGATGGATCAACACATGGAATCAATCTATGATGGGGTCCCTTGATGCATAACTATTTCAAAATATAAAGCATAAAAATGTAATAACTG CAGTGCATATTTGAAAATTTCTGGAAGAGTTAAGGATGATATCCATAAGAATTTGATAAGAGGGGAATAAATTCGTGAAGTGTTTTAAATTGAAAATGAA TACTTCTGAACACTAAAATAAGTAATTCATATATAATGAACTTGTGAACAGTAAATAATTAGTTTATATAGAATGGAACCTTCAATTGATCCAGGTACTT AGAAATGGGAATCCTGTGGATGAAATCTGGCCTCCCAAGATACTGCTGAACCTCATTCAGAATAGGAACCTAATAAATATTTATATATGGGCAAAAGAAG TGCAGTGTGGAGACCCTAATTTGTTTTGTTTGAAATTTCATGCCAATGACCTGTGAGATAACTAGGCTCGGGACTTATGGCTGTCATGCCTTTTTTATTG TGGATAGGAACATGGGACGATTTGTTCTTCTCAAACTGAGAATTATATTATCTTTTTGCTAAATTAGAATGAGAGGCAGTTCTTTTCTTCTGTAATAGAG GGTGAGCCTCAGTGCAACGATAAAGTTGCTGCTTAGTGACCAAGAGGTCACGGGTTCAAATCCTGCAAGCCTCGTGCACTGAGCTGTTCTTTTTTTTTTG TATGAATCATTGTCAATTGCCATATCTTTATGTAAACTTTTCATGTCTTCTGTTTTCCGATCAGTTGCGTTAACACTTATTGGAGGTGTGCAACATGTTG ATGCTTCTGGAACAAGGGTAAGAGGGGAGTCTCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAG CAATCGATCTGTTATTACCACTGGGTTAGGAAGCACCAGTGCAGGATTGACTGTTACAGCAGTGAAGGATGGAGGGGAGTGGATGTTGGAAGCTGGGGCC CTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGACGAATTTGATAGTATGAGGGAACATGATAGAGCGACAATACATGAGGCCATGGAACAACAGACAA TAAGTGTTGCCAAGGCTGGTCTTGTCACAACACTCAGCACTAAAACAACAGTATTTGGCGCCACGAATCCTAAAGGACATTATGATCCAGATCAACCCCT GTCTGTCAATACATCACTCTCCGGTCCTCTAATAAGCAGGTTTGATATTGTCCTCGTGCTCTTGGATACAAAGAATCCCGAATGGGATGCAGTGGTTTCA TCTCATATTCTTTCTGAGGCAGAACCTGATAAAGCCAAGAATGATGAAGATCTAGCAAACATCTGGCCTCTTTCTACACTCAAGAGGTAAAAAGTGTGTG GCTGATGACCATGGTCATGGATATCATTGTTTACAGAAAAGAAAAAGATGTTTGAAGTTTAGAGTCCTATTTTGCATTGGTGCTACACCGATAAGGAACT TTCAATTCTTTGTCATATTTAAGCTCTGTCAGCAAATTAGTAATTTATGTTGCCAACATGAAGCTGTTCATAATTTTAGGCTTACTTGTAGTTCCCCAAC CTTTTCTGTCATTTGCTTTGAATATCATATAGTGTACAAAGCTTTCTAACTTCTTCTGCTCATCCCATTCCTTTTTCTTTTTTTTTTCTGAGTAGACTCT TATTAATTTCAAAATTATGATTTAAGATAAACCAGTTTTTTTATGGGCGATTAATGATAATATATTGACCTTAGTTATCTGCGAAGTTCATTCGCCATTA ACTTCCTTTGGTCCTACGGAGCACTTTCAAATTAGGCAGATCTGTTTTTTCCCGAATTTCCTGATTTCAGTGTTGATGGCTATGCAAGAGACTTTGATTA CTTATGATAGGGAAATGAATCCCACAGGTATATAAACTATGTAAAAGAAAATTTCAGACCTGTCCTCACAAGAGAGGCTGAAATAGTTATATCCTGCTAT TATCAACTTCAAAGGAAATCTGCTACTGATAATGCAGGTTTGAACTGGAAACGTATCCTTTCTAAATTGAGCTTAATACTTCATCAATTCATGTCATTTG ATTTCCTTGGAAATTTGATGTAGCTAGGACTACTGTCCGAATGCTGGAAAGTTTGATACGTCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAG GTAACTCGATTGGATGCCATCACAGCTATTTTATGCGTAGAATCCTCGATGACTACCTCGGCTATTGTGGATTGCATGGGGAATGCTCTGCATTCCAATT TCACTGAAAATCCTGATCAGGAATATGCTAAGCAAGAAAAATTGATCCTAGAAAAATTGGGATCAATAGATGACTTCTCTGATATGAACAACATGGAAGA CTGAAGACCAAGGAAGGGCAACAAAATACAAGAGTTGTATAGATTAATGATGAAAGTGATTATTTTGGATGGTTTTGCTAATTTTATTACAGTGGAATAG ATTGCTTTAGCATTGAATGAGAGGAAAGGATATTATTTTGGTGCCTTTCCTGTCTTAGCTTTGTCTATAGTTTTGTCCACTCAGGTTGAATGCTTCTGAG ATGTACTTGACAGAATGAAAGGGTAAATTTGAACAACAATGACTTCCTTATCATGTAACTGTTTTGTAGCAAATTATTTTCCTTCCTGATGATGAATATG AACATGTTAGTGAGTTACTACAT BLAST |
Tissue | pods |
Gene name | LI_gene_153641; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_526490
Blastp | Probable DNA helicase MCM9 from Arabidopsis with 87.56% of identity |
---|---|
Blastx | Probable DNA helicase MCM9 from Arabidopsis with 87.56% of identity |
Eggnog | dna replication licensing factor(COG1241) |
Kegg | Link to kegg annotations (AT2G14050) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019426007.1) |
Pfam | MCM2/3/5 family (PF00493.22) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |