| Id Trinity | TRINITY_DN47576_c0_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_526142 |
| Sequence | CTATTAATGGAGAAACGGTACCTATATTTTCACTTATTTTAAATGATAAAATTGTAACTTTGAGGATTTATGCAACTTACATTCTGATTGTCGTTAATAT ATCGAATCATCATTCTTTGTCAAAAAGTTTCAATCTTTGGTCAAATTTCGTCAAACAGAGTATGATTCAGAGGGACCCATCTTCTTCTTCCACAGCACTC GAGCTTAAAGATCGGACCCACAGTGGAGACAGCATAGTGGACGTTCCTCCGTCGGAGCGGCGGTCGGAGCCGTTAATGCCGGTGATTTTTGACGTCGAGC GCCACTCCAGGCCATTCAAACGGTGGTTCCCTTGGCTGGTGCCGTCGTTTGTGGTGACTAACGTGGCATTGTTCGTTATCACTATGTATGTGAATAATTG CCCGAAGCATTCAATTCCCGGTTCTTGTTTTGCTCGTTTTCTTGGTAGATTCTCTTTTCAGCCCCTCAAACAGAACCCTCTCCTTGGTCCTTCTTCACTC ACATTAGGAAAGTTGGGTGCCCTGCAAATGCACAAAGTTGTTCATAAACATCAGGTTTGGCGGTTATTCTCTTGTATATGGCTGCACGGTGGGGTTATCC ATGTGCTTGCCAACATGTTTAGCCTTGTTCTTATTGGAATTCCTTTTGAGCAAGAATTTGGATTTGTTCGAATTGGACTTCTGTATGTCATATCTGGTTT TGGGGGGAGTTTATTGTCGTCTCTATTCATACATTCAGGTATCTCAGTAGGTGCTTCTGGTGCAATATTTGGCTTACTAGGAGCCATGCTATCGGAGCTC TTAACAAATTGGACAATATATGCTAATAAGTTTGCTGCATTGTCGACTCTTATTGCCATCATTATAATCAATTTAGCTGCTGGAATCCTTCCACATATGG ACAATTTTGCTCACATTGGAGGATTTATCTCTGGTTTCTTTCTTGGGTTTGTCTTTCTGATTCGCCCTCAGTATAAGTGGGTTAGCCAAACAAATTCTCA TTCTGGATTTGTTGCCCCTCCTGTGAATTCTAAGCACAAACCTTATCAGTATGTACTGTGGGTCATCTCCTTCATGCTACTTTGTGCTGGGTGAGTTCTC TATCTTTATCTCGTATTTTATTTCTCTCTTTTCAATCTTACACTTTATTTTATTTTATTGCATACACTGACTTTCCTGCAGGACTTGGCTGTGCCCCATG TACAACTTTTATTTTATTAGGCAGCTTCTCTCCAGTGATATGTTAGGGGGTACTTTGATTATCAGTTTAGGATTTCTATACCACCCATTATTAGTTATCA TATACGGTTTCCATTATATCCACTATTTTTTCTGTGTTGAGTGTGTTGCATCATCATGCTTGAGTCCCCCCTAATCTGAAAGTTGGCTAATTTACAGATT TATAACTGGGATGGTTTTGCTCCTCCGAGGAGTTAACTTGAATGATCGCTGCTCTTGGTGTCATTATTTAAGTTGTGTTCCTACCTCAAAATGGAGCTGC AAACCACAAGAAGTTTATTGTGAGTCAACCCAAATGGGGAACCAACTCAACATAACGTGTTTGAGCAATGGGAAAAGTGACATTTTTTCTGTGTCAAATA ATAGCCCTTCCCAGGCTCACGAACTATGTTCTAGTCTTTGCAGTTGATATATGTACAAATACAATATCTCTTGGCGCGTTACCATTGAACAGATTTATGC ATGTTATTCATTCTTGTGACCACAGAGAAAGTCTTCAATGGTGCATTTCTAATGATGGTTGTTGTGTCTGCCATCATTGGTATATTCTTGTCACTGTTAT TACCATTGATCTTTTCTAACTGAAGAGGATGAGCCAAAGTTTATATCGTAAGGAAGATTAGTAACAATCAAAGATTGGAAGTGTTGTCAAATGTACAATG TACAATGTGCATTGCATTAGATTATTAGTTGAGTATCTTGTTATGGTTTATTGCTACAAACCTACATTCTGATATCTCTATCCTGTAGTCATTACTGTCA TGAACCAACGCTTCTTCAATCTTTGATTGGTTTTATATCTTTGATAGGCTTCCTCACTCAATTTATTTGGACTTGAAATTTTACATTTTTATTAGGCAGC AAGGATTTAATTTGAGATCAGTTAATGAAGCTATGAGATAGTGACACAGGTTTTTCAAGAAAAAAAAAAAGTAAAGTTTTAGATTTAAAATTATTTTTAA ATAAAAAATATAAATCTTTAAACATATTATAGCCTCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_153750; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_526142
| Blastp | RHOMBOID-like protein 1 from Arabidopsis with 75.48% of identity |
|---|---|
| Blastx | RHOMBOID-like protein 1 from Arabidopsis with 75.48% of identity |
| Eggnog | rhomboid family(COG0705) |
| Kegg | Link to kegg annotations (AT2G29050) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019454071.1) |
| Pfam | Rhomboid family (PF01694.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |