| Id Trinity | TRINITY_DN47579_c0_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_525190 |
| Sequence | CCCTACAACTGTTGAAGTAATTTAAGAGCAGTGCAGAGGTAAAGACGAAATTGTAGCAGTAACTACTAAAATCGCCACAGAATATTTTCATTCATCAAGA TATAGAAGAGATGGGTGCTCCTGACAGAAGAAGCAGAAATCAATCGACAGCTTTGGCACTCACTAAACACCTTTCATTGGATCCTAATGTTATTCCAGCT GGTAGTTTAGACGGTGATGTTAAGAATCTTTACTTCAACATCACGGCGGGGTCTGGAAATGGAGACAGTCACAATAATGAGGAGGTGTTGAAGTGGGTAG AATTTGCAGAAGCTTTCCCTGTAGCCCTTGAAGCATGCTTTGAGGATCTGCAGAAATTAAATGAGGAACTGGCTGGAAAGTCTGTGCTTTTTGGCAATGG ATTGAAACCCTCTCCAGCTGATGTTATAGTGTTTTCAGTGATTCATTCTTCCCTGATCAATTTTCCAGTTGCGAACAAGGAAAAACTGCCACATATATTG AGATGGGCAGATTACATCCAGCACAAGGAGAATTTTGTAGGTTTATTTGAAGAAATATTGTTGCAGAAACCTGAGTTTGAGCCTCCAGTGAGACATCTAT CCTTTATTACTTAGTGCTTTCTTTATAGACTTACCAAAGGTATTTCTCAAGGCATTTAGATGGAGTCAATTTTGACACATTGATTTTTCAACATTTTTAG AAAATGTAGTAACGGTCATCCTTGGATATATGTGTATGTAACCTTTTCATTTTTTTATTCCAAATGTTCATTATTGAACTGAGTATCAAGTAATTGGAAA GGTTATTTTTCGACCTATCCGGATAACAATCATTTATATTTTTTAAGACTTAACATGTAACTTAACTGGCAAGAGTATCTTAATTTTCTTCATGACGATA ACAATACAGAAACCACGAAGCTTGTATAAAATTTTATATTTGCTTGACTTGAATTATGCAATATAATCCAACTTGGTGCTAAGTTCCTGAAGTATATATA GCCTTTGTCTTTTGGTTTGCAAATGCTACTGGCTACAGTTATAAGATCTGAAACAGTGTAAACAGAAAACCTGGAATCTTCACTTCAACTTAGGCCTTTG CTTTATAGGAGAATGAGAGTATTGTGAAAGCCATTCTGTGTCAGTTAATAACTTGTCTTCAGAAGTTCTGTTATGCACCCTAAGGCATGCATATGGAGAT TTGTGAAGTCTATTTGTTCAGAGTCTTTTTTTTTCTTCATTTTCTTTGCAGGTAACAAAATCTGTTGGAGCTGTGGAATCTGACTTCAAATCAAACAAGA CTGAACAAAGCATAAAGAGTGCAAGCAAGTCAGAAGAAGACATTAGCAAGGATAAAAACAAAGCTGAGAACATCAAGGGAAAGTCAACAGGAGATAAAGA ACCTGATAAGGCCAAAGCAAAACCTGCTGACAAAGAATCTAACAAAGGGAAGGCGAAACCTGCTGAAAAAGTGGCCGACAAAGACAACGAAGTTAGTGTC AGTTTGCTTAACATTCAGGTTGGATTAATTCGCAAAGCATGGAAGCACCCATCTGCAGATAGTTTGCTCGTTGAGGAGATAGATGTTGGAGAAGCCAAAT TGCGGCAGGTTGTCAGTGGGTTGGCAAAGTACTGCAGTCCTGATGAATTGACGAATCGTCGTGTTGCACTTATTACAAATGTCAAACCAGGAAAACTTCG GGATGTGGTGTCTGAAGGACTGGTCTTATGTGCTTCTAATGAAGGTCCTACCATTGTGGAGCCCTTGCTCCCTCCAGAAGGATCTAAAATCGGGGAGCGC ATTTCATTTTCAGGGTAAGTTGTTCAAAACATCTCAGGTCAGAGAGTCAGACACACACATATGGTATATCACTATTTCATCCTAGGGCCCGTTTGTTTAA AGCTTTCTTCACACAAGGTGATTATTTTGATACAAAAAAGCAGAAGCTGCAAAACAGCTTTTTTTAGAACCAATATTTTCCGATTTATCTAAAAGCCACT TTTTCCAAAGTCACTTTTGTAGAATCACTTTTTTAAGCTTAAGCCAAAAATGCTCTAATATCGTAGCTTGTAGGTCAGATATGCGTAGTTCGGCATAAGT CTGAGTGTACTAAACATGGCTACTTCCATTCTTATTTTTAATTATATTCATACTATTAAAGAGTACCCCATCTTGCTGTCTAACTTTAGTTTCTAAAAAA CCACCGTGACTAATTACTCACTTGAAAATATAAATATAAATTACATTATATTAATTATTTAAAGATTTAAAGATATAACCATCCAAGGTTGGTCTAGTTG ATAAGGAATTGGGAGATAACTAAAAAATAGATTTTGGGAGAATACTTGTGTTGATGTCCTTTTCTCATTACTCTTTCCTCCTCTTTTTTACTATCTACTG TTCACAATTCTCCCCTAGACCTTTTTACAGTTTACATAAGATTCTGTAGGATCCTGGAACTTTCTAGGAACCCATATGATAGAGAAGCTAATGAGCTCCA GTCCCTTATGGCCTTACATGAATCTACTTCTTTTTCCTTGATTCTACTTATGTTTCTTCTTGCGAATCGTTCAGTTTCTCACACATTCTCCCTCAATGGA TCGGTTTTCGTTATTCAACTATGTAGCCCTTCATAGAAAGTGCTTATCAGATTGTAGTTTGTAGGGCTGTTTTAATTGTGCTTTGCATATAATTTTCTTG AGATAATTAATTTTACATAGATTTGTCATTCCTCTAATTTAGGGTTGATGGAAAGCCAGAAGATGTACTTAACCCGAAAAAGAAACAGTTGGAGAAGATT ACACCGCATCTTTTCACTGATGACAAGGGTGTAGCCACATTCAAGGGAATACCATTTATGACCTCTGGTGGACCTTGTACATCATCAATTCCCAGAGCAA CTATTAAATGAAGATATGGCAGATCTATCCACTCAGATTGTTGGTACCATAAAATATTTAAAGTTTTGAACGTGAACAAAATTAACTATGGTTTGTAAGT TTTATGTTGTAGTTAAGGTTTGGTGGTGTTAATTTCTGGAAGTGTAATTTTGAATCCAATGACTCGAGTTAATAATGACTCGAGTTAATACTGTGATAAC TCTCTTTAATGTAACACGTGATTTTGACACGCGACCCATTTCTATGAATTTATTGAGCATGTCATCCTTTAAGGTTAAATACTAATGTAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_153768; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_525190
| Blastp | - |
|---|---|
| Blastx | Probable methionine--tRNA ligase from Oryza sativa with 54.13% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0002140) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019416880.1) |
| Pfam | - |
| Rfam | - |
| GO | - |