| Id Trinity | TRINITY_DN47579_c0_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_525192 |
| Sequence | CCCTACAACTGTTGAAGTAATTTAAGAGCAGTGCAGAGGTAAAGACGAAATTGTAGCAGTAACTACTAAAATCGCCACAGAATATTTTCATTCATCAAGA TATAGAAGAGATGGGTGCTCCTGACAGAAGAAGCAGAAATCAATCGACAGCTTTGGCACTCACTAAACACCTTTCATTGGATCCTAATGTTATTCCAGCT GGTAGTTTAGACGGTGATGTTAAGAATCTTTACTTCAACATCACGGCGGGGTCTGGAAATGGAGACAGTCACAATAATGAGGAGGTGTTGAAGTGGGTAG AATTTGCAGAAGCTTTCCCTGTAGCCCTTGAAGCATGCTTTGAGGATCTGCAGAAATTAAATGAGGAACTGGCTGGAAAGTCTGTGCTTTTTGGCAATGG ATTGAAACCCTCTCCAGCTGATGTTATAGTGTTTTCAGTGATTCATTCTTCCCTGATCAATTTTCCAGTTGCGAACAAGGAAAAACTGCCACATATATTG AGATGGGCAGATTACATCCAGCACAAGGAGAATTTTGTAGGTTTATTTGAAGAAATATTGTTGCAGAAACCTGAGTTTGAGCCTCCAGTAACAAAATCTG TTGGAGCTGTGGAATCTGACTTCAAATCAAACAAGACTGAACAAAGCATAAAGAGTGCAAGCAAGTCAGAAGAAGACATTAGCAAGGATAAAAACAAAGC TGAGAACATCAAGGGAAAGTCAACAGGAGATAAAGAACCTGATAAGGCCAAAGCAAAACCTGCTGACAAAGAATCTAACAAAGGGAAGGCGAAACCTGCT GAAAAAGTGGCCGACAAAGACAACGAAGTTAGTGTCAGTTTGCTTAACATTCAGGTTGGATTAATTCGCAAAGCATGGAAGCACCCATCTGCAGATAGTT TGCTCGTTGAGGAGATAGATGTTGGAGAAGCCAAATTGCGGCAGGTTGTCAGTGGGTTGGCAAAGTACTGCAGTCCTGATGAATTGACGAATCGTCGTGT TGCACTTATTACAAATGTCAAACCAGGAAAACTTCGGGATGTGGTGTCTGAAGGACTGGTCTTATGTGCTTCTAATGAAGGTCCTACCATTGTGGAGCCC TTGCTCCCTCCAGAAGGATCTAAAATCGGGGAGCGCATTTCATTTTCAGGGTAAGTTGTTCAAAACATCTCAGGTCAGAGAGTCAGACACACACATATGG TATATCACTATTTCATCCTAGGGCCCGTTTGTTTAAAGCTTTCTTCACACAAGGTGATTATTTTGATACAAAAAAGCAGAAGCTGCAAAACAGCTTTTTT TAGAACCAATATTTTCCGATTTATCTAAAAGCCACTTTTTCCAAAGTCACTTTTTTTAGAACCAATATTTTCCGATTTATCTAAAAGCCACTTTTTCCAA AGTCACTTTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_153768; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_525192
| Blastp | Probable methionine--tRNA ligase from Oryza sativa with 39.61% of identity |
|---|---|
| Blastx | Probable methionine--tRNA ligase from Oryza sativa with 39.61% of identity |
| Eggnog | Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (By similarity)(COG0073) |
| Kegg | Link to kegg annotations (4341140) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019416880.1) |
| Pfam | Putative tRNA binding domain (PF01588.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |