| Id Trinity | TRINITY_DN47600_c1_g1_i4 |
|---|---|
| Name Transcript | Ll_transcript_360301 |
| Sequence | GAAATTAAGAACACAAAATTTGTTGGTACGATGATAATGTTGGAAAATAACAACATAACACGCCCACCTTTCAATTCCAATCCAATATGATGATATAACA TTCTTTCACTCCTCACTCACTCATTTCTCTCATTCACTCACTATTTCTCTCATTCACTCACAACTATCCTATTACCTTTTAGCACTTACCCCAAGAATGA GATATTCTGTAATCCTTGGTTCTTCCATTGTTACTCCTCCAAATCCATCTTCTTCTTCTTCTTCTTCATCTTCATCATCTTCTTCCTCTTCTACTCCTTC TTCTCATAACCGCCACTTCACAAAGCCTCACTATTCTTCTCTTCCAACCCTTTCTCCTTCTCCCTCCAACACCATCTCCCGCACCCTCCAGGTTCCGCTC AACCAACGTCCCAAGCCTCAGCAACAACTTCAGTTTCTGTTCGATGATGTTTCACAGCTTCAGATTCTGGTTCGGAATGTTGTGGCGGGTATCCGAAGCA GGAAGGTTCGGAGTGTTATTGATACTTTGAACAAAGTGTTGAAGGAACAGGAGCAGTTTGGTGGTGGAGGAGGTTCTTTATCTTTGTCTACTCATTTTGA TGCTTCTTCAATGGATATCATTGGGAAGGAATGTGTTTCTATGGTTAAATGTGGTCGAATTCATGAAGCTGTTGAATTCATGGAGGTTCTCTCACGTTTC CAATTATCAGTCAGAAAGCTAGTTCAGCCATCCGACATTATAAAGCAATGTGTTCTTAGTCGTAACCCAAATCTAGCTGTGAGGTATGCTTGTCTTCTCC CACATGCACATATATTGTTCTGCAACATCATATGTGAATTTGGTAAAGGTAGGGATTTAGCATCTGCTCTGAAAGCATATGATGCATCAAAGAAACACTT GAATAGTCCCAACATGTACATATACCGGGCAATAATTGATGCTTGCGGTCTCTGTGGCGATTGTATGAAATCTAGGTACATATATGAGGATTTACTCAAT CAGAAGATCACTCCTAATATATATGTGTTCAACAGTCTCATGAATGTGAATGTCCATGACCTGAGCTACACATTAAAACTACACGAGAATATGCAGAATC TTGGCCTGAAGCCAGATATGACATCTTATAACATCCTGCTGAAAGCATGCTGTGTTGCTGGAAGAGTTGACTTGGCTCAAGACATGTATAGGGAACTTAA ACATTTGGAATCAGTTGGACGGCTGAAATTAGATGTTTTTACCTACAGCACAATTATAAAGGTATTTGCAGATGCAAAAATGTGGCAAACGGCTCTAAAA ATTAAGCAGGATATGCTGTCTGCTGGTGTTTCTCTTAATACTGTTGCATGGTCATCACTAATCAATGCTTGCGCACATGCGGGGCTTGTAGAGCAGTCAA TCCAGTTATTCGAAGAAATGCTTTTGGCTGGCTGTGAACCTAATACACAATGTTTCAATATTATTTTACATGCTTGTGTTGAAGCTTGCCAATATGACAG GGCTTTTCGCTTTTTCCATTCTTGGAAGGGAAATAAGATGTTGGAGTCCTCCGGCGAAGGCTACAAAAGCAATTTTGAGCAGGGAGACATGCATAATGCT ACTAATTTGCCAACTGGCATTTCTAATTCTCACATCTTGAGTTTTGCTAAGAGGTTCCCTTTCAAACCTACTACAACAACATATAATATTCTACTGAAGG CCTGTGGTACTGATTATTACCATGCAAAAGCAATAATCAACGAGATGAAAACAATAGGTCTTTCCCCTAATCACATAAGCTGGTCAATTCTGATTGATAT ATGCGCAGAATCAGAAAATGTCGAGGGTGCTCTCGAGATTTTGAAAACCATGTCTTATGATGGAATTAGAGCCGATGTTGTCACGTATACAACAGCCATT AAGGTTTGTGTGGAAAGTAAGGATTTTAAGCAAGCAATATCATTATATGAAGAAATGAAGAGATTTGAGATACATCCAAATTTGGTGAGTGCCTATAGAC TGCAGTTATTATGCTTCAGTTCTCCACAATATAGTAAACTTCAATAGCTCTAAATTCGATGCAATGTGGACGAGACTGCTCTAAGACACTAAGACTATAC AACCATAGACCAGCTAAAAAGAAATGACAGGCAATGCACAATATAGTAAACAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_153947; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_360301
| Blastp | Pentatricopeptide repeat-containing protein At5g02830, chloroplastic from Arabidopsis with 55.45% of identity |
|---|---|
| Blastx | Pentatricopeptide repeat-containing protein At5g02830, chloroplastic from Arabidopsis with 54.88% of identity |
| Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
| Kegg | Link to kegg annotations (AT5G02830) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019425441.1) |
| Pfam | Pentacotripeptide-repeat region of PRORP (PF17177.3) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |