| Id Trinity | TRINITY_DN47651_c4_g2_i5 |
|---|---|
| Name Transcript | Ll_transcript_359609 |
| Sequence | ATTACTCAATAATTGTAAAAATCGCTTAAATTATAAGTCACAGCTTTTTATTCATCAGAAATTTAGATTGTATTGCTCTTCAAGGATCGCTCATTCATTG AGAGAGAAATCGAAAACGAGTGTTCATCTACACTCACTCTGCTAGGGCATGTATTTGTATACGCATTCCCGGACGCGTGATTGGGGAGTCTTCAAGTTAC ATAGCAGCTGATGACAGCTCCTCTGCAAGTTCTGAAGACAAGCAAGATGAAACATTAGGGTTCTGGTATATGTCTAGGAAAGAAATAGTGGAGAATTCTC CGTCAAGAAAAGATGGCATCGACTGGAAGAAAGAGACATTTTACCGCAAGTCATACTGCACATTTTTACAGGAGTTAGGAATAAAACTTAAAGTGCCTCA GATAACTATAGCAACAGCAATAATCTTTTGTCATCGGTTCTTTCTTCAACATTCTCATGCAAAGAACGATCGAAGGGTGGGTTGTTGCACTTTATAATTG ATATCGTGAGTGGCCTGTCTAGTAAGTACAGTCATCTAACATATCTCAACATTATCTTGAATTCTTGATAGTGGTTGGTCCTGTATGTCTTTTTTCCTTA GGCTCTGTATGTTAAAAGTAGTTTATAGCTTTGAGATTGTGTTATAATTGTGAGATTGTAGCTTATAATATTGAAGATAGTTGAAAGTTAATTGAATTAA AGTTGTTTGAAAAAACCAGCTATGTAACTAATTGAAATTTGTTGAATAACTTAAAAGGAAGTCTAATATTTTATTAATGTAATATTATGATTAAATATCA TTCATTTTTATTTATTTATTATCAACCAATTACTTAATTATTACCAACAATGTGTTAGTCTAGTGGTGTAAGGCCCACTAGATCCCGAGGATGACCAAAA GGTA BLAST |
| Tissue | pods |
| Gene name | LI_gene_154385; |
| Additional information | - |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_359609
| Blastp | - |
|---|---|
| Blastx | Cyclin-T1-4 from Oryza sativa with 77.78% of identity |
| Eggnog | Component of the Mediator complex, a coactivator involved in regulated gene transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Binds to and activates cyclin-dependent kinase cdk8 that phosphorylates the CTD (C-terminal domain) of the large subunit of RNA polymerase II (RNAp II), which may inhibit the formation of a transcription initiation complex(COG5333) |
| Kegg | Link to kegg annotations (4352229) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019440088.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |