| Id Trinity | TRINITY_DN47659_c3_g3_i7 |
|---|---|
| Name Transcript | Ll_transcript_359407 |
| Sequence | GGTAGAGATGGTTTGACACATAACATGTTGGATAATATACATGCTCATTGGAAGCGGCGGAGGGTGTGTAAGATAAAGTGCAAAGGAGTGTGTACTGTTG ACATGGAGAATGTGTGCCAGCAGTTAGAGACACACATATAGGGAACAGTTCCCATTTTAAAAATGTGAGAACAGCAAGTCTAGGCTGTACAACCATACAT GAATGATTCAGATTAAAAGTTGTTCAATGGACACATGACCAGTTCAAAAAAGTAACATGTCATGTTGGGTAATCTCCCAATCACACCTTTATATTTTGCT GCTGTTTGGAGCACTCCTTTGTTCATTATTGGTAATTGGTTGGCTTCTTGATCTAAAAGTCGTTACTTTGTTTCTTTTCTTACAATGGTTTACATTAACA TACTTTCGTTTGTTGGATATGCTCCCCGTTATCTGGTTTTCCAGGAAAAGACAGGAGGGAAAGTCATTTTCCGGATGATGGGTGTGCTGTACCTTTTTAG AGGCAGAAACTACAACTATAGAACACGCCCATATTTTCCCCTGATGTTGTGGAAACCCATTCCTCCAGTATACCCTAAGCTGATTCGGCGAGTTCCAGAA AGTCTAACACTAGACGAAGCAACTAAAATGCGTCAAAAGGGAAGGGACTTGATTCCTATATGCCAGATAGGAAAAAATGGTGTTTACTGTAACCTAGTAA AGAATGTCAGAGAGGCATTTGAAGAGTGTGAACTAGTGCGTATAAACTGTCAAGGACTAAATAAGAGTGACTATCGAAAGATTGGAGCAAAACTAAGGGA TCTTGTTCCATGCACATTGCTTTCATTTGAAAATGAGCACATACTTATGTGGAGGGGACCAAATTGGAAGTCCTCTTTACCAGATGTCGGAGATGTCTCC AAGGGAGCCAGTGAAGTTGATGTGAACAATGAAAACTACAAAACACTGCCATCAGACACCCAAGAACTCTCAGCACCACCAAACAGTTCGGTCGAGGCTG CAAATAATTTGTCACATGACACTATCGTTTCCACCAGTTCAAGTGGTGTGACTTTGGATGAGGTTGAGTTACCATTTTTGACAGAAAATAGCAAGCAACC ACTGTCTATTTTTACTGATTCTGCTTCACTTACGAGAATCTTTGAAGCTGAAACCACACGGGATGTCACAGACTTCTATGAAGCTGAAACCACAAACAAT GCCACAGGCTCCTATGGTGAGCCTGAAGCTTGTGGGAGCACCAGTCCAAGCATGATCATATCAGACTATGATAGCTGTGCCGAATACCCCTCAGAAGCTT TGAGTGGTAGTCATGGAACCGAGGATAGAATGGATAACAAAAGCTCTAGTGATAGTTTTGTTGCTTCTGTTTCACGATCCAATGAGATGCAAGGTGCTGT TGACAATTATATCAATGGCATGGAAGATCCCCATGCTGATAAGTTGCTTGATGATTCCGGGGTAGGAGATGTTAGTCTGTTATCAGCCTCACCTTGTACC GAAGAAATTTTATTACTGTTGGAGCAAGCTGTTGAGAAGGGCAGTGCTCTTGTTTTAGATGAAGTTCCTTTGGACGCTGACAAAATTTATCAAACCACAG TTTCCTTTTCTAAATCAGCCTCACCAGGACCTGTTTTTAGGACATACAGAAAAGTTGGGGATAAAAAAAGTAAGAAGCAAGAAGTTTCTACTTTGGAGAC AAAAGAAAGTAACACTGTTGCCATCGAAGTTAATCCCATCAAAGCTAATACCATCAAAGTTAAAAGGGAGAAGAGTTCTAGAATTCCAAAAAGAGGAAAT TTTGATCAATTTCTGAATGTTGTACCACAAGGAACATTAGGAGTAGATGAACTTGCAAATTTATTATCATGATTCTGGCTCATATTATGAAAACTACTGA CAGTGTCATGCTTACTGTAATTATTAACAATACAGTCATTTAGTTTTATTCTTCTCTGTC BLAST |
| Tissue | pods |
| Gene name | LI_gene_154450; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_359407
| Blastp | CRS2-associated factor 1, chloroplastic from Zea with 39.67% of identity |
|---|---|
| Blastx | CRS2-associated factor 1, chloroplastic from Oryza sativa with 37.9% of identity |
| Eggnog | CRS2-associated factor(ENOG410XQZ0) |
| Kegg | Link to kegg annotations (542118) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019429199.1) |
| Pfam | CRS1 / YhbY (CRM) domain (PF01985.20) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |