| Id Trinity | TRINITY_DN47701_c2_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_374362 |
| Sequence | ATATAATCGAAATTCAAAGAATTTTGGACCTTCCTTCTCTTCGCTCTTCTCTACACACCACAGTGGAATTCATAAAATTCAAACTTGGCAGCACCCATTT TCCAATTCCTGGTAAATTTCAAAACCCAGTTTTTCGTTTTCAGAATTCTCCAATTCCTTGCTGGAAAACTGAAACCCTAGGGTTTTCTTCTCCGCTTCCA GAATTCATAAGATTACAATGATTTGCATAGATATTTTGTCCACTGATGATGAATAAAGTTACCTCGGAACACGGTGGCGGTGGCACCTTCCACGCCGTTC ATGCAGAGCGTGACCTAGAATCCAATTGGGAAGTTGACCTAGCCAAGAAACTTGAAGAGTATCTGCTCAAAATTAGCTCTGGTGAAATCACCGGCTACGA AGAAAACCATGATACTCTAAATTTTGCAGAAGCTGCGCTGTTGCTTCAGGGTTCCATTCAGGTGTATAGTAGGAAAGTGGAGTATCTCTACAACTTGGTA TTGCGTGCTTTAGAGTTCCTTTCGCATAAAAGACAGCAAGATCATATAGATGGGGCATCAATCCAACCTGAAGAAAATGGTCCATGTGCTGTTGCTGATG AAGAAAATGATCAATTCTGGGGCTTAGATGACATCCCAGTCGATGAGAAGAATTCCTTGGAGATTTCAACAGACAAAGAAGTGAATTTGAATCACTTTGT AAAACCCCCTTCAAATTTGGTTGTTCTTGAAGGTGACTGCTTAGATTCTACTGGTGATGGTGGGGAATTGGAGTCTTATTTGCTGTCCACCACAGACTTG TACCAGGATTTTATTTTATTGGACGCATCTGATGCTGTTGCAGTTGACGGGTTTATAAAGGGAAGCAAAACTGATATAGCACAAAACGCTGCTGAAAGAC CAACCTCAGCCCGTAAAACCTTTCTTTCTCCTACAAGATGCTCTGTGGGAAGTGCTCATAAATCATCGGATGCAAAGAGTCAGCGGGCTAATCCCAACTG TTCCCCCAAACTTAATTGCAGTTATGATGACAACAACGTCCATCCCAGTTCTCCTATCTTTGCTGGTGATGTGGATGATGGATTCGACCCATCTAGGGAT TCAGACAATTCAGATGCCGATGATCCATGGAAACCATTAAATCCGCATGAACCAGGCAACTTGAGGGTGAAGCCTTTTAGGAAAGTGAAAACTTTAAAAA AGAATCGCATCAATGTGACACGTCAAGTTTCCATGAGCATGTTGTTTCCAGTTGCAAAATTGCATGGTCCTATCAGTCCAGAGCTCATGGAAATGTGGGA GATGCGACGTCGTGACCATGAACGACGAAAGGATTCTCAATCCGCTCCAATATATGAGAAGCTGAGGCAAACTCTCACTGCTGAGGTGCCTAAAACTGGT GGAACATTAAACTCTGAAGCTGATAATGATGACAATGAAGATGATATTGGAAATCCTGATTTTGATATGCCATGGAGTGCCTACATGGATGAAGATCTCC CTCCTTGCAGTAAAGAGCATGAAGGTGATGATGCTCATGTCAAGGATAGTGATTATCCTGAACATGCTAATTCTCAGGAAAGCTTAGAAGATCTTTGTCG CTCTCACCTGAATGCTCTCCTAGCTAGTATAGCTGAATCTGAGAAACAAACCGAAATGGCTGCTAGGGTTTCAACATGGAAACAGAGAATTGAGCACCAT CTGGAAAAACAGGAATCACACCCGCCATTTGATATCCGCGACTATGGTGAGAGAATTCTGGACAAACTATCTCTTGAAGAAAGCAGTAGCCCTGTCCTAC CTTTCTCTGATCTAGTAAGTGGACAGGAAAAATATGACGTGGCCCGGAGTTTTTCTTCTCTTCTTCAACTGGTGAACAATGGAGAAGTAAATCTAGAAAG AAATGGAGTTGATGGGGAGTCTGTCTGCTACACAGATGTGAATACTTTTCATGTTAAGCTCCTTGAACACAATAAGAAACGGGAGGATGCGCAATCTCGT TTGTCAAAAAAGAGAGCGACGTCTCGAACAAAAACACCATCTACAAAAGGTGACAAGAACAAAACTGGAAGGGAGAAATCTCTGAATTCAACTCCTAGGG AATATGGAGCAACAGGGTTGTCCCCTCCATCAAGTTGCAAGTTTCCTATCAAGCTTGGAAAGGCAAGTGCCATAAAGTTATCTCCGGAGGCGAAGAGGAA GCGTAGATCCTTGCATTCAGCAGGGTGACAGTGATAATTAGCTGCTTGATGATTTAATGTAGGACATTTGCTTCATATCTGGGACATAGGATAGGAAGTA ATGTAGGTTTCTGAAATACTAATATCCATCAACTTCCAAGTGTGTATAATTGTTGCTGACATGAATACATGGATGTAAAAATATCCCACTTTGTATCAGT CAGTGTATTCTTATTATTCCTTATTATCAATGTAGTAACTTGTTCATGCAAAATATATTGATATTATTCACTTTAGTTAGGATTCCTCCTTTGATAGTTA ATACACACCCCTCTTCATGGTGAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_154736; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_374362
| Blastp | Condensin-2 complex subunit H2 from Arabidopsis with 50% of identity |
|---|---|
| Blastx | Condensin-2 complex subunit H2 from Arabidopsis with 49.26% of identity |
| Eggnog | non-SMC condensin II complex, subunit H2(ENOG4111BR3) |
| Kegg | Link to kegg annotations (AT3G16730) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419763.1) |
| Pfam | Condensin II complex subunit CAP-H2 or CNDH2, N-terminal (PF06278.10) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |