| Id Trinity | TRINITY_DN47708_c0_g2_i1 |
|---|---|
| Name Transcript | Ll_transcript_375920 |
| Sequence | GATCAATTTGAATCTGATAATATGAAACATAATGAATCACTTCAATCAAGTGTGGCCAAACCTGCAAGTAGGAGTCGTGTGTTTGAGGTGTAACTTTTTG GCACTTTTTTATTTGAATTTTGCTTTTTTAAATGTAATAGCTTGCCATTGTGAAATTTGTCTTTTTTGTTGTTTCTTTCAGGCATTCTCGCAAATGCGCC TTTCAGAAGGTTCTGCACATTTGGGCTCCTTTTCTGCACGAATTAAGGATGAACCAATCTACTTGCAGGCAAATATAGGAAGGGAAGGGCAGATTGGAAC ATCATGGATTAGTTCTACTGCTTCAAAGGCTGCAGATGCTGTGCTTTCGACTTGCCCCTCTCCATATGAAAAAAGATGCTTACTGCAACTTCTTGCTGCC ACTGACTTTGGTGATGGTGGATATGCAGCAGCGTACTATCGAAGGGCTTATTGGAAAATTAGTTTAGCAGAGCCTCTACTTCGTAAAGATGATGAGTTAC ACTTAGATAATGAAACATTGGATGATGCCTCACTCTTGTCTGCACTAGAAAAGAATAGGCACTGGGAGCAGGCAAGGAACTGGGCCAAGCAGTTGGAGGC AAGTGGTTCACCCTGGAAATCTGCAATACATCATGTTACTGAATCTCAGGCTGAATCTATGGTAGCTGAATGGAAGGAGTTCCTTTGGGATGTGCCAGAA GAGAGGGTTGCTTTATGGAGCCACTGCCACACACTATTCATCAGATATTCCTTTCCTTCTCTCCAAGCTGGATTGTTTTTCCTTAAGCATGCCGAAGCAG TAGAGAAAGACCTTCCTGCTAGAGAGCTTCATGAGCTGTTATTGCTTTCTCTGCAATGGCTGAGTGGGATGATAAGTCTTTCCAACCCTGTGTGCCCATC ACATCTTCTGCGTGAAATTGAAACCAAAGTATGGCTCTTAGCTGTTGAGTCTGAAACTCAGGTGAAGAATGAAGGAGACTTCAATTTTACCTTTTCTACC AGGGAGAATGCCGTCAAGAATGATTCCAGTATTATTGATCGAGCTGCAAGTATAATAGCAAAGATGGACAACCATATAAATACAATGAGAAATAGATCTG TAGAAAAATATGAGTCAAGGGAAAGTAACCAAATCCCTCACAAGAATCAAGTGGTGGATACTGGTCTTTCAACTACATTTGCTGGGGGTACAAAGACAAA AAGAAGGGCTAAAGGGTACATCGCATCAAGGCGCCCACCTATTGAATCAACAGATAAAAATGCCGATACTGATGATGGTTCTGGTACTCTTGGTGTAAAA AGTGAGCTGCAGATTCAAGAAGTAAACTTAAAAGTGGAAATGTCTTTCTCTAGGTGGGAGGAAAGGGTTGGAGCAGCAGAGCTGGAAAGGGCTGTACTTT CTTTGTTGGAATGTGGTCAAATTGCTGCCGCCAAGCAGCTACAACATAAGTTCTCTCCTGAAAAAACACCAACTGAATTTAGACTTGTGGATGCAGCTTT GAAGCTTGCTGCTATTTCGACTCCTCCTGGCAATGTATCTACGTCAATGCTTGACGAGGAAGTCCATTCGGTTATGCAATCGTATGGTGTACTGAATGAC AAACACCATGTTGACCCACTGCAGGTTTTGGAGAGTCTGGTGGCCATTTTTACTGAAGGTAGTGGGCGTGGTCTATGCAAAAGAATAATAGCAGTTATAA AAGCTGCAAATGCCTTGGGCCTACTATTTTTTGAGGCGTTTAACAAGCAACCGATTGAGCTGCTGCAGCTGCTTTCTCTTAAAGCGCAGGAGTCCTTTGA GGAGGCAAACTTTCTTGTGCAGACTCATCCGATGTCAGCTGCAAGTATTGCTCAGATACTTGCTGAATCTTTCCTAAAGGGTGTGTTGGCTGCACATCGT GGAGGATATATGGAGTCACAAAAGGAGGAAGGACCTGCTCCGCTTCTGTGGAGATTTTCAGACTTTTTGAAGTGGGCAGAGCTTTGCCCGTCTGAACCAG AAATTGGGCATGCATTAATGCGTTTGGTGATTACTGGACAAGAAATACCGCATGCCTGTGAGGTTGAGCTTCTTATTCTGTCCCACCACTTCTACAAATC ATCTGCTTGCCTTGATGGAGTTGATGTTCTTGTGGCCCTTGCCACGACCAGGGTTGATGCTTACGTCTTGGAGGGTGATTTTCCATGTTTGGCTCGCCTG ATAACAGGAGTCGGAAATTTTTATGCTCTCAATTTCATTCTTGCCATTCTTATAGAAAACGGTCAATTGGATCTTCTTCTTCAGAAGTATTCTGCTGCTG CAGACACAAACACAGGAACTGCTGAGGCTGTCAGAGGATTTCGGATGGCTGTTCTTACATCTTTGAAGCATTTCAACCCTAATGACCTTGATGCATTTGC CATGGTCTACAATCATTTTGATATGAAACATGAGACAGCAGCTCTTTTAGAGTCACGTGCAGAGCAATCAGCTGAGCAGTGGTCCCGCCGCTACAACAAG GACCACAATGAAGACTTATTGGATTCTATGCGCTACTACATTGAAGCAGCTGAAGTTCACTCTTCCATCGATGCTGGCAACAAAACACGTAGAGATTGTG CTCAGGCTTCCCTTCTGTCTCTTCAGATTCGAATGCCAGATTTCCAGTGGCTTTATCGATCAGAAACCAATGCTAGGCGAGCACTAGTTGAGCAGTCTCG TTTTCAAGAGGCTTTAATCGTAGCTGAAGCTTATAACCTGAACCAGCCAAGTGAATGGTCTTTAGTACTATGGAACCAAATGCTCAAACCTGAAGTGATG GAAGAGTTTGTGGCTGAATTTGTGGCAGTTCTACCTCTTCAGCCATCAATGCTGATTGATTTAGCTAGATTCTATAGAGCCGAAGTGGCTGCCAGAGGGG ACCAATCCCATTTCTCTGTCTGGCTCACAGGGGGGGGGTTGCCAGCTGATTGGGCTAAATATTTAGGACGATCATTCAGATGCTTATTAAAGCGGACAAG AGATTTGAGGCTGCGAGTGCAGTTAGCTACAGTGGCAACTGGATTTGGGGATGTCACTGATGCATGCAATGAAGAATTGGATAAGGTCCCGGACAACGCG GCACCACTAGTGCTGAGGAAGGGTCATGGTGGAGCTTACCTCCCTTTAATGTGAAACTTTCTACTGCAGATTATCATATATGATTGGACAAACTACAATT GACATGAAATTGGTTCTTGACTTCTAGTGCTGGTGTGAAATCAATTAAGTGACTATTGCTGCAAACATGAAGGGTACCTGAGTATAAACCAAAAACGCAG ACAAAATGAAAATTGGATGATTAGTTCATATACCTTAGAGCAAGATGTTTATTTACAATTTTTTGTTGATTGAGTAAACACTTGATGGTTGTACATTAGG CCACTGTATCTGTAGCTCATTCTTGTAAACACTGTTCTAGTTTTGTTTTCTCCATATATTTTTTGAAGGGAGGCAGGGAGCATAGAGTGGTTTATTGTTG ATTTTGAAATCAGTAGAATAGAATGTCCCATTAATTTATGATGCTGTTCTC BLAST |
| Tissue | pods |
| Gene name | LI_gene_154798; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_375920
| Blastp | Protein DDB_G0268328 from Dictyostelium with 25% of identity |
|---|---|
| Blastx | Protein DDB_G0268328 from Dictyostelium with 26.72% of identity |
| Eggnog | spastic paraplegia 11 (autosomal recessive)(ENOG410XR4T) |
| Kegg | Link to kegg annotations (DDB_G0268328) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019462547.1) |
| Pfam | Spatacsin C-terminus (PF14649.5) |
| Rfam | - |
| GO | - |