| Id Trinity | TRINITY_DN47708_c0_g2_i4 |
|---|---|
| Name Transcript | Ll_transcript_375924 |
| Sequence | AAAAAAGAACCTTACGGAGTTGGATCGGGTAGCTTCTAACAGTAAACAACGGAGTTAGTCCATTCCCTTCTTCTTTTTCCCCGTTCTCTAAATTTGTCTC CGTTCACTTTCTACACTTTTAAACTAAACCTCCGTTTCCTTCATCGCAACAAAAAAAAAACGAAGACTCACTCTCTCATTCTACAACTGATTCTTCAAAT CCATGCAATTTCAAATTCAATTCTCTTAATTATCCTCTACCTTCAGGAGCATGATGGATTTGCCCCTGGGCAGTGAGGATCCTGCTATACTTCAGTTGCA TAAGTGGGACCCGTCTGAGGCACTGCTTGAGCTTTCAGAGTTTCGAGAAGCTTTTCTTTCTCCTACAAGAGAGATACTGCTTTTGCATTCGTATCAAAGG GAGGCTCTTTTGGTTCCTCTGACTAAAGGAGAGTCACATTCTGGTGGTCAAGAAAGTGGCTACGATAATGATGAGCATAATCCAGGTTCATCAAGTCTTT CCTCACAGGCGTTCACTAGGCCTGACAGATCAGATTTGGTGAATGGTGTAACTTGCACTTCAGGATCAGAAATTGTAATTGACCCTGATACTTATCCTGC TAAAATTAAATGTTCAAGATCAAATAGTTATCCAATCATCAGTGATGTGAATTCTTTGGCCTGGGCGCTTTGTGGAGACAGCTATGATCAGCATGGTGAT GCTCCATTTAGAGAGTTCTTATTTGTGTCTGGAAGACGCGGGGTGACAGTCCATGCTTTTTCCAGACCGAATAAAGCCAGAGGAGTGGATCAAACTGCAT TAGAAGGTGACTTTAGGCAAGGCAGGTGGGTGGAATGGGGGCCTGATGCTATGTTAACTCAAAATAGGGAAGATGGAAAATATTCCAGCATTAGTCATGA ACTCTCTGGAGTTCAGAATGCAAATCAGAGTGGTGGAGATGGGGGGGTTGAATTATTGACAGGCTTTGCTGCTAAGAGATACTTAGAATCATTTTTCACT AATGTTGAAACTATTGTTTCTGATGGTAGTGCCCAGACCAAGTTTCCCAAGAATGCAGATATTCCTTGCTCTGCAGAAGTGGTTTCGTTTAATATTTTTG ATGGCAATCCACTTCTGGACCATTTCTCCAAAGAAAAATCATTCCATGAGAATTTGCAGGAACCAGCAGATTCGGTAGACGATGCATCTGATCACTTTAG CTTGAGCTTGTGTGGAGCAGATGCTGAGTTGGATTGTTTCTTCAATGTATTTGGTATTGAGATTAATGGGTTCTATGAATGCCCCAGAGTGTTTTCGAGT GCTTCATATTGCTTGATGGGATTCTTTTTTACTTTAATCGATCACATGTCTGTCAATACCAATGATCCACACCAAAGAGGTAGGAGCAGGAATTTACTTA TTGTTGCCAGGTTAGAAAGTTGGGGTATTCAGTGGGTTTCAGTGGTGAAGCTTGATGAAAGAATAAACTTAGGTCAGACAGTTGAGTGGATGGATTTCCA ATTTTCGGATAATTTTCTTGTCGGTCTTAGTTCTTCTGGCTTGGTTGTTCTTTACGCGGCAATGTCTGGTGAATATGTGACACATTTAAATGTTCCAAAG GCTTGTGGACTTGATCTTAATTTTGATTTGCAAGGATTAGAAAAATGGCCCTCAAGTGGTGATATAGACGTTAAACAAGAGTGTGACTTTAGGGCTAGTT TGTCTGATCAGCATAATGATTCAATTAGACGATCATTCAAAAGGTTAGTTGTTGCGTCTCATACCTCACTTTTAGCTGTAGTTGATGAGTGTGGTGTGAT CTATGTTATATCTCTGGGTGAATATGTTCCCGACAAGACTTATTCATATGAGAAATTGCTTCCGTACAGTCAGAATTTTGGGCTGGGGATGTTGTTTGGT TACGGAGTTGGTGGTTCTGATATAGATCGCCAAATGGTGTTCTCTAATTTTTCTGGTTGTTTCCATTCTAATGATTTGAAAATGAAAAATGGAACTGCTT CTGTCACAGACAAAGCTGTGACGGGTGATGTGATTCAGAAAGTTGAAGGCTGTATGCCTGCACAAAAGGGGGGCTTGTGTGGTTCCTATTCTAGTGGTTT TTCTGCTGCTTCTGATGTGAAGTCACCGGTCATGAGAAAGATATTCCTTCCTAGCTTTAGAGTTTGTGACACCGATTCTATTTGTTTTTCTCCTTTGGGA ATTACTATTCTTTCTAAAAAGAAGCATGTAAAGAATCAGAAAGGTTCTCAACTTGTCCATTTTAATCTTCAAGTGAAGTTAGATGTCCATGATGAATATT TGTCAAACAGTGCATGTGATGTATACAACTTTAGTGGAAAAGAAGAAGCTATTATCGGAGAAGCAATTGGTTGCACATTCCAAGGTTGTTTTTATATTGT GAGAGAAGGTGGTCTATCAGTGTACCTTCCCTCTATTTCAATTTTACCAAATTTTCTTCCAGTTGAGTACATTGGTTATCGCCGATCAAGTAAGGATATA GAGACTCCAGTTCTAGTAAAAGATAATGTGGAAATAAAAGATCCAATAAAAGAATTTTCTCCTTGGAAAGCTGAAATTTTGGATAGAGTTCTTTTGAATG AAGGCACCAAAGAGGCAGATCGATTGTGCTTGGAAAATGGATGGGACATCAAAGTTTCTCGTATTCGTCAGTTGCAAATAGCATTGGACTACTTGAAATT TGATGAAATAGAAAGGTCTTTGGAAATGCTCGTGGATGTGAATCTAGAAGAAGAGGGGATTTTAAGATTGCTCTTCGCTGCAATTTATCTTATACTTAAT AAAAGTGGCAATGACAGTGAAACTTCTGCTGCTTCAAGGCTTCTTGTGCTAGCTACTCGCTTTGCAACCAAGATGCTTCGTAAATATGGTTTGCTACAAC ATAAAAGAGATACATGCATAGCAGAGGCTCTTAACAAGACAGGATTACTTTCTCTTCCCCCAATCGAACCAGTTAAACTTCAAACGGAGGTGGATTATGC TCGAAAACTGCGAGAGATGGCTCGCTTCTTGGAGATCATCCGGAATCTGCAATCTAGGCTTAGGCCAATATTCCAAAGGGCTGACAGTGGAAAAGAGTCA TCTTTAATGAGTAGGGAAATGTTGCAGGAAGAATCTCAACTGTCAGCTCTTCCATCAGATCTAGTGTCATTGGAGATGTTGAACCAACATGACTTTCCTT ATCCTCTACCTGCACCGCACAGCGACAATAATGAGAATCTCACACTGGTGCCTGTTGACTCGAACTCCCACTTGGTCTCAGAAGAATTTCATTTTACCCC ATCAGGAGGAATTTTGGAAAAGAAGGGCTTGCCTGTGGAAAATCCAAAAGAGATGATGGCACGCTGGAAGGTAGATAAACTGGACCTTAAGACTGTGGTT AAAGATGCTCTGCTCTCTGGTCGTCTCCCTTTGGCAGTTCTTCAACTGCATCTTCATCAGTTGGAAGATTTTGTTGTTGACAAAGAGCCCCATGATACTT TCACTGCAATTCGTGACATTGGCAGAGCTGTTGCTTATGATTTATTTTTGAAGGGCGAAACTGATCTTGCCGTTGCAACACTTCAAAGACTTGGAGAGAA CATTGAATCCTCTCTCAAACAACTTTTGTTTGGCACTGTAAGGAGATCTCTACGAGCCCTCATTGCTAACGAAATGAAAAGATATGAATATCTAGGGCCA TATGAGTGGAAGATATTGGAAGACATGTCAATGATTGAGAGTCGCTATCCTAGTAGCAGTTTCTGGAAAACATATCATCGCCGGCTGAAAGATACCAGTG TTCCATCAGACTCTGTTTCACCATTAGAAATCCAATTAAGGCTCTTGCATAACCATTCATTTGATGGCCACGTCATTGAATGCGGTGAGATTGATGGAAT TGTGTTAGATTCGTGGATGAATATTAATGGAAGTTCCTGTTCTACGGAAGTTGATGAAGATGATGCTCATGCTGGATATTGGGCTGCTGCTGCTGTCTGG TTTGATGCTTGGGAGCAAAGAACTGTTGATCGTATGATATTGGATGAACGTTTGCCTTCGGGTATTGCTTTGTTGTGGGAATCACAACTTGAATATCACA TAGGCCGCAATAATTGGAAGGAAGTCTCTACACTGCTCGACGTGATGCCTTCATATGTTCTATCTACTGGAAGCCTTCAACTTAATTTGGATGTTTTACA GCCTGCCTCATCTTTTGGATGCAATATGAAGTCTTCAAATTTTGGAAGTTTCTTTGTCTCTCATGAAGAATTAGATTCTGTATGCATGGTAATACCAGAC GTCCAAATATATAGGTTTTCACCCGATGTATGCTCTCGGTGGTTGAGGATTCTTCTGGAAGAAAAACTTGCAAAAAGATTTATATTCTTGAAGGAATATT GGGAAGGAACAATGGAGATGATAGCTCTTTTGGCTCGTTCAGGTTTCATTTCTGGCAGAGATCAGATCTTGTTTGAGGATATTCATGTTGAAACTTCATC AAATAGAGATGGAGCTGTACAAGCTATGCATAAAATGTTGGTACAACACTGTGCACAGTATAACTTGCCAAATCTTTTAGGCCTTTACCTTGACCATTAT AATTTGGTCCTTGATCAAAATTCACTTTACGCATTACAGGAAACTGCAGTTGGTTGTCAATGGGCTAGATGGCTACTCTTATCTAGGGTAAAGGGGTGTG AATATAAGGCCTCAATTGCCAATGCTCGTTCAATAATGTCAAATAATTTGGTGCCTGGAAATGACCTCAGTGTTCTGGAGTTAGATGAAATAATTCGTAC CGTTGATGACATTGCTGAAGGAGGGGGAGAAATGGCAGCTCTGGCAACCCTGATGCATGCTGCTGCCCCCATTCAAAGCTGCTTAAATAGTGGTGGTGTA AATAGGCATAGTAATTCCTCTGCCCAGTGCACATTGGAGAATCTTAGGCCTTCTTTGCAACGGTTTCCCACATTATGGCGCACACTTGTAGCAGCATGCC TTGGACAAGATACCCTGAGCTTGTTGGTGCCCAAAGCAAAAAGTGTTTTGTCGGACTATCTTAGTTGGCGTGATGACATCTTTTTCTCCACTGGACGTGA TACATCACTTCTACAAATGCTTCCATGCTGGTTTCCTAAGCCTATACGGAGATTGATACAGATTTATGTCCAGGGCCCTCTCGGATGCCAGACACTTTCA GGGTTCCCTACTGGGGAAACTTTGTTACATAGAGACATTGATTTATTCATAAATGCTGATGTGCATTCTGATATAAGTGCACTCTCCTGGGAGGCAACTA TACAAAGGCACATTCAAGAAGAGCTACATGGTCCTTTACTTGAGGAAAATGGACTTGGGCTTGAGCATCATTTGCACCGTGGACGAGCACTGGCAGCTTT TAACCAAATTCTTTCCCATAGAATTCAAAGTCTGAAATCAGAAGGGGAAGCCAGCACTTCAGCTCATGGACAGACTAACACTCAATCCGATGTGCAAAGA CTTCTCTCACCATTAGGACAAAGCGAAGAGACTCTCCTTTCATCTGTTTTGCCAATTGCTATTATGCATTTTGAGGATTCTATGCTCGTTGCTTCATGTG CTTTTCTTCTGGAGCTTTGTGGTTTGTCTGCCAGCATGATGCACACTGATATTGCTGTGCTAAAACGGATATCTTCTTTCTACAAATCAAGTGAAAATAA TGAAAATCTTAGGCAATTATCACCGAAGGGATCTGTTTTTCATGCAATGTCTCATGAAGGCGATGTAACAGAATCTCTTGCTCGAGCTCTAGCTGATGAA TATTTGCACAGGGATTCCCCTGTAATTGCCACTGAGACAGTTGCCCCCAGTAAAAGACCTTCAAGAGCTCTTATGCTGGTCTTGCACCATTTGGAAAAGT CAAGCCTTCCACAATTGGTTGATGGAAATACCTATGGGTCATGGCTATTAAGTGGAAATGGTGATGGAACTGAGTTAAGATCTCAACGAAAGGCTGCTAG CCAGCACTGGACATTGGTAACAAATTTCTGTAGGACTCACCAGCTTCCCTTAAGTACTAAGTACCTTGCTGTATTAGCTAGAGACAATGACTGGATTGAA TTTTTGTCTGAAGCCCAGATTGGAGGATATTCATTTGATACAGTGGTCCAAGTGGCATCAAAGGAGTTTAGTGATCCACGTTTCAGACTTCATATGTTGA CAGTTTTGAGAGGAATGCAGTCAAAGAAAAAGGCAAGCTCTGTATCGGCCTTGGATACACTGGAGAAAGGCGATGAAACAAACTTTCCTGATGAAAATAT GTGTATTCCAGTTGAAATCTTCCAAATATTAGCAGAGTGTGAAAAGCAAAAAAGTCCTGGAGAGGCTCTCTTGATGAAAGCAAAAGAGTTGTCCTGGTCA ATATTAGCAATGGTTGCTTCTTGTTTCTCTGATGTCTCTTCATTATCATGCCTCACAGTTTGGTTGGAAATTACTGCAGCAAGAGAAACTTCATCCATCA AGGTGAATGATATTGCTTCCCAGATTGCAGATAATGTTGGAGCGGCTGTAAATGCAACTAATGCCCTCCCTCTAAGCGATAGAGTCCTTACATTTCATTA CAATAGGCAGAGTCCTAAACGTCGACGGTTAATGACACCCATTTCACTAGACTCCTCTACTTCTGCAATATCTGATATTGGAAGCACTTCTATTGGTGAA AAAATATTTGATTCCCAAGATAACACTACAGATGATAAAAAAAGAGTAGAAAATTCTGGATCCATTGACATTGCAAGCGATTCTGGTGAAGGGCCTGCTT CTCTTTCCAAGATGGTTGCAGTGCTTTGTGAACAGCAGTTATTCTTGCCTTTGCTGAGGGCATTTGAGATGTTCCTTCCATCATGCCCCTTGTTGCCGTT CATCCGTGCTCTTCAGGCATTCTCGCAAATGCGCCTTTCAGAAGGTTCTGCACATTTGGGCTCCTTTTCTGCACGAATTAAGGATGAACCAATCTACTTG CAGGCAAATATAGGAAGGGAAGGGCAGATTGGAACATCATGGATTAGTTCTACTGCTTCAAAGGCTGCAGATGCTGTGCTTTCGACTTGCCCCTCTCCAT ATGAAAAAAGATGCTTACTGCAACTTCTTGCTGCCACTGACTTTGGTGATGGTGGATATGCAGCAGCGTACTATCGAAGGGCTTATTGGAAAATTAGTTT AGCAGAGCCTCTACTTCGTAAAGATGATGAGTTACACTTAGATAATGAAACATTGGATGATGCCTCACTCTTGTCTGCACTAGAAAAGAATAGGCACTGG GAGCAGGCAAGGAACTGGGCCAAGCAGTTGGAGGCAAGTGGTTCACCCTGGAAATCTGCAATACATCATGTTACTGAATCTCAGGCTGAATCTATGGTAG CTGAATGGAAGGAGTTCCTTTGGGATGTGCCAGAAGAGAGGGTTGCTTTATGGAGCCACTGCCACACACTATTCATCAGATATTCCTTTCCTTCTCTCCA AGCTGGATTGTTTTTCCTTAAGCATGCCGAAGCAGTAGAGAAAGACCTTCCTGCTAGAGAGCTTCATGAGCTGTTATTGCTTTCTCTGCAATGGCTGAGT GGGATGATAAGTCTTTCCAACCCGTATGGAACATATGGAGAATTACTTTCTTTTTCAATTTGAGTTAATATATGTACTTATCATGCTGCTAAACTTTTCA GTGTGTGCCCATCACATCTTCTGCGTGAAATTGAAACCAAAGTATGGCTCTTAGCTGTTGAGTCTGAAACTCAGGTGAAGAATGAAGGAGACTTCAATTT TACCTTTTCTACCAGGGAGAATGCCGTCAAGAATGATTCCAGTATTATTGATCGAGCTGCAAGTATAATAGCAAAGATGGACAACCATATAAATACAATG AGAAATAGATCTGTAGAAAAATATGAGTCAAGGGAAAGTAACCAAATCCCTCACAAGAATCAAGTGGTGGATACTGGTCTTTCAACTACATTTGCTGGGG GTACAAAGACAAAAAGAAGGGCTAAAGGGTACATCGCATCAAGGCGCCCACCTATTGAATCAACAGATAAAAATGCCGATACTGATGATGGTTCTGGTAC TCTTGGTGTAAAAAGTGAGCTGCAGATTCAAGAAGTAAACTTAAAAGTGGAAATGTCTTTCTCTAGGTGGGAGGAAAGGGTTGGAGCAGCAGAGCTGGAA AGGGCTGTACTTTCTTTGTTGGAATGTGGTCAAATTGCTGCCGCCAAGCAGCTACAACATAAGTTCTCTCCTGAAAAAACACCAACTGAATTTAGACTTG TGGATGCAGCTTTGAAGCTTGCTGCTATTTCGACTCCTCCTGGCAATGTATCTACGTCAATGCTTGACGAGGAAGTCCATTCGGTTATGCAATCGTATGG TGTACTGAATGACAAACACCATGTTGACCCACTGCAGGTTTTGGAGAGTCTGGTGGCCATTTTTACTGAAGGTAGTGGGCGTGGTCTATGCAAAAGAATA ATAGCAGTTATAAAAGCTGCAAATGCCTTGGGCCTACTATTTTTTGAGGCGTTTAACAAGCAACCGATTGAGCTGCTGCAGCTGCTTTCTCTTAAAGCGC AGGAGTCCTTTGAGGAGGCAAACTTTCTTGTGCAGACTCATCCGATGTCAGCTGCAAGTATTGCTCAGATACTTGCTGAATCTTTCCTAAAGGGTGTGTT GGCTGCACATCGTGGAGGATATATGGAGTCACAAAAGGAGGAAGGACCTGCTCCGCTTCTGTGGAGATTTTCAGACTTTTTGAAGTGGGCAGAGCTTTGC CCGTCTGAACCAGAAATTGGGCATGCATTAATGCGTTTGGTGATTACTGGACAAGAAATACCGCATGCCTGTGAGGTTGAGCTTCTTATTCTGTCCCACC ACTTCTACAAATCATCTGCTTGCCTTGATGGAGTTGATGTTCTTGTGGCCCTTGCCACGACCAGGGTTGATGCTTACGTCTTGGAGGGTGATTTTCCATG TTTGGCTCGCCTGATAACAGGAGTCGGAAATTTTTATGCTCTCAATTTCATTCTTGCCATTCTTATAGAAAACGGTCAATTGGATCTTCTTCTTCAGAAG TATTCTGCTGCTGCAGACACAAACACAGGAACTGCTGAGGCTGTCAGAGGATTTCGGATGGCTGTTCTTACATCTTTGAAGCATTTCAACCCTAATGACC TTGATGCATTTGCCATGGTCTACAATCATTTTGATATGAAACATGAGACAGCAGCTCTTTTAGAGTCACGTGCAGAGCAATCAGCTGAGCAGTGGTCCCG CCGCTACAACAAGGACCACAATGAAGACTTATTGGATTCTATGCGCTACTACATTGAAGCAGCTGAAGTTCACTCTTCCATCGATGCTGGCAACAAAACA CGTAGAGATTGTGCTCAGGCTTCCCTTCTGTCTCTTCAGATTCGAATGCCAGATTTCCAGTGGCTTTATCGATCAGAAACCAATGCTAGGCGAGCACTAG TTGAGCAGTCTCGTTTTCAAGAGGCTTTAATCGTAGCTGAAGCTTATAACCTGAACCAGCCAAGTGAATGGTCTTTAGTACTATGGAACCAAATGCTCAA ACCTGAAGTGATGGAAGAGTTTGTGGCTGAATTTGTGGCAGTTCTACCTCTTCAGCCATCAATGCTGATTGATTTAGCTAGATTCTATAGAGCCGAAGTG GCTGCCAGAGGGGACCAATCCCATTTCTCTGTCTGGCTCACAGGGGGGGGGTTGCCAGCTGATTGGGCTAAATATTTAGGACGATCATTCAGATGCTTAT TAAAGCGGACAAGAGATTTGAGGCTGCGAGTGCAGTTAGCTACAGTGGCAACTGGATTTGGGGATGTCACTGATGCATGCAATGAAGAATTGGATAAGGT CCCGGACAACGCGGCACCACTAGTGCTGAGGAAGGGTCATGGTGGAGCTTACCTCCCTTTAATGTGAAACTTTCTACTGCAGATTATCATATATGATTGG ACAAACTACAATTGACATGAAATTGGTTCTTGACTTCTAGTGCTGGTGTGAAATCAATTAAGTGACTATTGCTGCAAACATGAAGGGTACCTGAGTATAA ACCAAAAACGCAGACAAAATGAAAATTGGATGATTAGTTCATATACCTTAGAGCAAGATGTTTATTTACAATTTTTTGTTGATTGAGTAAACACTTGATG GTTGTACATTAGGCCACTGTATCTGTAGCTCATTCTTGTAAACACTGTTCTAGTTTTGTTTTCTCCATATATTTTTTGAAGGGAGGCAGGGAGCATAGAG TGGTTTATTGTTGATTTTGAAATCAGTAGAATAGAATGTCCCATTAATTTATGATGCTGTTCTCCCCTCACAAAGTGTATAGTGTTCCTGTACATCAATA TAAAAAAAAATTCATTTGCCTTGTCTCACAAAATGATAATGTTATCTGCTATCCTTTCAAAAATTAAATTTCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_154798; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_375924
| Blastp | Spatacsin from Homo with 27.27% of identity |
|---|---|
| Blastx | Protein DDB_G0268328 from Dictyostelium with 26.72% of identity |
| Eggnog | spastic paraplegia 11 (autosomal recessive)(ENOG410XR4T) |
| Kegg | Link to kegg annotations (80208) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019462547.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |