Ll_transcript_374381

• Id Trinity: TRINITY_DN47709_c1_g1_i8
• Name Transcript: Ll_transcript_374381
• Sequence: GCATGTTTCATATCTGTTTATTTTCCCTCTCCCAAGTAAGCCTTCTGAACTCAGAGGTCCATACTTGGGCAATGACACTATTTTAGGGCCTAGTACCCTC TATTGGGGTATCATCAGAATTGAAATCAAAGTCCAGCCCATAATCTAAACAACATTCTATTGGAGACAAGAAATGTAACAGCATCAGTTGTAAAAGCAAC AGAGTGAGGTGGCAGAAGTTGAGGCATTATGGCCACAGCATTAGCCATTGCATCATCTTCCTCAATTCCAAACATTGCAACCTTAACTTCTTCTTCTTTC AACTCAAACTCATCATACTTGTCTCTTCCAACTAGAAGCTATCCATGTCTGCAATCTACATCCAAAAAAATCATCTTTTTTCACCACCCATCAACTCTAA TCACTCTAAAACCAAAAAATAACAGACTTGGAGCAATTTCTCCTCCTTCTGCTACTGCTGTTGAAGATGTTGATACTGCTCAGCAATTGGTCTCCACCAC TGGTGATGATGGGGTATCCATAGTTGTATCATCACTTCTCTTTGCTGCTTTCATTGGATTATCCATTCTCACTATTGGGGTTATCTATTTGGGAGTTACA GACTTCCTGCAAAAGAGAGAGAAGGAGAAATTTGAGAAAGAAGAAGCAGCTAATAAGGGCAAGAAGAAAAAGAAGAAGGTGGTGAGAGCAAGGGCAGGGC CTAGAGGATTTGGGCAGAAGTTTGATCAAGAGGAGGATGACGATTAGGATGCATAATAAGCACATGGAAGACATTTAAGATCCGGAAACGGATCTGGCGA CTTTATAATTTGGTGACTTCAGAACAACATGAAATATAATTACTCAATCTAACACTCAATCAGTTGACTTTGATTGAGCAATTGCATTGACCAATCAGAG AATGATATGAATCATGTTTTGGTTAATTAAGTTTAAGGTTGACCAATTGTGTTCCAAGTTGATTTAAAGTCGCCAAATTTTGAAGTGGCCGAATCCGGAT CCTTCAGGTACCTCCACCGACGGGTCCATCTTCTCTTCTCATCCACCTGCTCAACATTCTTTCTACTCTTCCTTCTCCTCGACGTCCAACAATCTTCTGC AACCGTTACTGTATCCTTTGTGTTCTAGTAAAAAACGACTAACATTAACACCTAAACAAATAATACAAATGAATAATAAATGATATATAAATATTGACGC TACTAGTATATAGATATTAAACTCTTATTATTTTGTTATTAATAAGTACCATAACTCCATAAGTAATTATTTTCATAAAAAAAATTGTTTAGATAAAGTA AAAATGCATCTACAAGCAAAGAGTTTGGTAGTTGTGAAGAGTGAGATGAGTTGAGTTTAAGTGTACTATCATCACCAGAAACACAGAAAGGAACTGAACA TCCTTAAAAGCACTTCAACATCTCAATCACATTCCTCTCTTTGGTCTCAAATTTTTGTAAGTGTCTCTTTTATTACTACTACTACTATTATTATTATCTG CATTCATGATTTTTGTGTAATTGGGTATGGTTACATGTTTGATCAAATTTTCTGATCACTGATCCATGAATGCATAAGAAATACTGAATTTTTTTGTTCA ATTGTATTCATTTTGAAACTTGTCATCAATTATATGCTACAAAATGTGAATCACAGAAAGTGTATAATGTAATTGGCTTGATTTACTTAACATTCTACAA ATACTAATAAATCAAAGGCACAATGGTTTTATGAAGCCAGGTAGTGTCACTGTGAATTGTTGTTGCAAGGATTTGCTTTGCAATCATGAGTTTTGTTTTC AGAGGAAGTAGAGGAGACATTGAAAGTGGATTTTCAGAATATGTTCCTGAAAGAACCACAATGCGTGTTCATTCGGCTCGGCCACATAGCAATTCCCTGG CTCTTCTTATTATAGTTTTATGTTTTTTCATGATATTGAACTCTCCTCAAGCAACACATTATTTTTTGCTATGGCTTGTGCTGGCTTTCTTTGCAATGGC AACAAGCATAAGGATGTATGCAGTGTGTCAACATCTTCAAGCTCAGGCTCGGGCTCATGCCGCAGCAGCCACTGGGTTAATTGGCCATACTGAATTACGA TTTCACGTGCCACCATCATTAGCGATTGCAACTAGAGGAAGGTTGCATGGACTTAGACTTCAGCTTGCACTTGTAGACCGTGATTTTGACGAGCTCGATT ATGATACTTTGAGATCTCTGGACTCTAATATTGCTTCTACTATTCCGTCAATGACCGAGGATGAGATAAATGCTTTGCCTGTTCACACATATAAAGTTGC AGATCCAACAAAGGATGTCACTGCTGGAATAGAATCTTCAAGTGCAGCTGAGATTAAACAAGACCATGAAGGATCAGAGGAGAATTTGCATGGTCTAGAA GATGAGCTTACATGTACTATATGCTTGGACCAAGTTAACCGGGGGGAGCTTGTTCGTAGCTTGCCGTGCTTGCATCAGTTTCATGCCAACTGCATTGATC CATGGCTCAGGCAACAAGGAACATGTCCAGTGTGTAAATTCAGGATGGGGTTGTTGGCATTACAGAGAAACATGGATAGTGAATCTGATGGTTCTGGTTC AGATATTGTGTAGCACACTTCATAGTTCAAATACAGTTGTAAAATGGTGTCACTAGTAGTTATACACATATGTATATCTAAATATAATAATATTATATGA TGTGCTGCTACCTTGAACTTGACTTAAGCACAAGAATGTAAATTAATCTATCTTTACTCATTTCACACACAAAAAATGGACAAATCACCCTTTGAAC
• Tissue: pods
• Gene name: LI_gene_154802;
• Additional information: details;

Expression of Ll_transcript_374381

FPKM

• PAB: 0.2
• PNAB: 1
• PS1: 0.2
• PS2: 0.7
• PS3: 0.6
• PW1: 3.4
• PW2: 2
• PW3: 2.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_374381

• Blastp: E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 66.27% of identity
• Blastx: E3 ubiquitin-protein ligase SDIR1 from Arabidopsis with 66.27% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT3G55530)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019447966.1)
• Pfam: Ring finger domain (PF13639.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;