Ll_transcript_374390

• Id Trinity: TRINITY_DN47709_c2_g2_i3
• Name Transcript: Ll_transcript_374390
• Sequence: ATTCGTTTCTCTCTCTTATTCCTATAAAACCAAAGCTGGTTTCAGCTTACTTTTCTACATATACAACAAAAGCTTAATCTATCATCACTGAGAACCACAC AAACACTTGATAGCTTCCAATGGCACTTAGTGTTGCTTCTCCATCAACTAACTCAACTCCAATAAGGAAGTGGAAGTATGAAGTTTTCTTGAGTTTTAGG GGAACAGACACACGTTTTGGCTTCACAGACCACTTATACAATGGTTTGAAGAATAAAGGGATAGTTACTTATAGGGACAGAGAAGGACTTGAAAGAGGAG AAGTTATTTCAACAGAACTGTTCAAAGCAATTGAGGAATCCTTGTGTGCAGTAGTGATTCTATCTGAAAACTATGCTTCTTCAACATGGTGTTTGAAAGA GCTGAAGAAAATACTTGATTCTAAACACAACTTGGGTCAACATGTTTTGCCTATATTTTATGGTATTGAACCATCTGATATAAAGAGGCAGAAGGGTAGT TTTGAAGAAGCATTCAAGATACATGAGAGAAGATTTAAGGATGATAAACAAATAGTGCGGGATTGGCGTGCTGCTTTAGCTCAAGTTGCTGACTTAGCGG GCTTGAGTTCCATTCATTGTTATGAAACAGAACTCATTGAAAACATTGCTGAAATAGTATGTACCAAATTACTTCCAAGAATGTCATTCAGCTTTGATGG GTTAATTGGAATTGGTTCAAAAGTTGCAGAAATGAAATCACTTTTAGAGATGGGATCAGAAGATGATGTTTGTTTTGTTGGAATATGGGGCATGGGTGGA GTAGGTAAAACAACTCTTGCTAGTGTTGTCTATGAAGGGATCCGAAATGAATTTGAAATTAGTTGCTTTGTTGCAAATGTTAGAGAGGATTCTGAGAAAT ATGGTTTAGCTTATTTACAAATGGAACTTCTTTCTCCTCTCAAACATAGAAAGTTTGAAATAAAAAATGAATATGAAGGGAGGGAGAAAATAAGGCACTT TTTAAGCCATATGAAAGTTCTTATTGTCCTTGATGATGTTAGTGACAAAAGGCAACTAGACAATTTAGTTGGAAAACATGAGTGGTTTGGTAAAGGAAGC AGAGTAATTATAACCACAAGAGATAAGCACTTGCTAACACCAAAAAGACTATTCAGGAATTATGATATTGAAATGTTGAATAGTGATGAATCACTTAAGC TCTTATGTCTAAATGCATTTCATAATGATCAACCTGAAGCTGGTTTTTTGGATTTGTCCAAAGGTATATGTAACCTTTGTGGAGGGCTACCTTTAGCACT TGAAGTGATGGGCTCATTTCTTTGTGAAAGGAGTGAACTTGAATGGCAAGATGCTTTAAATAGGATGGAACAAAATGAAGGAGATGGTGATGTTATTCTC AAGACATTGCAGATAAGTTATGATGGATTGAGAAAGGGAGATAGAGCTATATTTCTAGATATTGCATGTTTTTTCAACAATATGGAAGAAAATATGCTGA GAACATTCTTGAAAGATTGTGGTCTTAATTCAATTCTTGGACTCAACATGCTTCTTGAGAAATCACTGGTATGTTATAACAAGACACGTATTCGAATGCA CGATATGCTTGTCCAATTGGGCAAGACTATTGTTTTGGATGAATCTCCTAATGATGCTGGCAAACAAAGTAGGTTATGGTCTCAGAAGGATATTGATAAA GTAATGGGAGAAAATGAGGGAGGAAAAGAAATTCAAGGGATAGTTTTCACCTCACCAAAACCATATCTGGCAGATTGGGACGAAAATTGTTTCTCCGAGA TGAAAGGTCTTAGGTTACTTGTGCTACAAAATGTGTATCTTTTACATGGTCTCAGATCTCTTCCTAGTGCATTGAAAGTTCTTGTTTGGGAGGGATATGC TATGAATGCTCTGCCACACATTGCTCAATCAAATGAACTTGTGAGCCTTATGTTGCCTTGTAGCAAACTGTCACAACTTTGGAATAACACACAGGTTTTA GGAAAGTTAAGGGTCATGGATTTGCGCCACTCCAAAGATCTGACTACAACTCCGGAGTTTGATAGAATTCCAAATCTAGAATCATTGACCCTGGAGGGTT GTGTAAGTTTAGATCAGGTTCATGAATCTCTTGGAAACCATAAGAAGCTTGTCAAAGTGGATTTCACAGGTTGCAAGAATCTAACAGCCCTGCCAAGTAA ATTGTGGATGAACTCTCTAGAGACATTAATTTTAACTGGCTGCATAAAACTTGAAAATCTTCCCGAATTTGACGAAAATATGCAAAGCCTATCAATGCTT CACTTAGAGAATACTGCTATAGCAGAATTACCTCCATCACTAGGCTTCTTAACTAGTCTTTCTGATTTGAACTTAAAGGGTTGCGAGAATTTGGTTTCCT TCCCAGATACCATGTGCAATTTGAAGTCTTTTCGAATTCTCGACATTTCTCTTTGCTCACAAATACAAAATTTCCCAGAAAACCTGAATGAGCATGTGCA TTTGGAAGAGCTTCATGCTGGTGCAACTGCTATAACAGAAATACCTTCATACATTAATGAATTCAAGAACCTCAAAATATTATCATTTCAAAGATGCAAA GGAACACATTCCATATCATTCACCTTACCCCTCCCATTGCCTCCTTCATTCTCAGGTCTCTCCCTATTGACAGAATTGGACTTAGCTTTCTGTAATCTCC ACGACGAATCGATCAATAGTGATTTTAATTGTTTGTCATCGTTGTGGAAGTTGAATCTAATGGGAAATCATTTTGTTAACCTTCCTCTTGGATGCATGTC TAATCTTTTAAAGCTAGAACAACTTAACTTGAGTTACTGCTTTTGGCTTCAGTCCCTACCACAGATTCCACCAAAACTACATCAATTTTTTGCAACACAT TGTTGTTCTTTGAAACCTCTATTAGACCAGCAACTGTGGAATCTCTTTGCATCACATCACTTCCAGAGTTACAGCACACCAAATTTTGCTGCAGATTTTA TCTTTCTAATGCATGGGGACGAAATTCCGTCGTGGTTTCTGAACAGAACGTATCATTGTGAAGACTCGGTACAGTCGATCTGTAATAAAAGTATATCAAT AACAATGGAGATTCCTCATGACAATTCTCCTGTCTGGTCAGGAATTGCTGTGTGCCTTGTGTTGGAAGAATTGTTACCTGAATCAATGTGTTTACGTTCC GTTTATTGGTATTTTAGATCTCCTGAATATGAAGGGTACACAAAAAGAACATATTTCAAGTTTTATGATGGAAGTGAAAATAGTAAGCTTTTCATTGCAT TTTTTCCGTTCACCGACTTCAATTGTTGGCGGCATTTAAGAGGGGGGCTGAACCAAAGGCTTCAATTGACAATGTATTGTAAGAATGAAACTACATTGAA TGGTGCTCCACTTAGTCCTGAAGAGGAGGATGGTGTGGTAGGAATAAGGGGTTGTGGTTGGCGTTTATTATCTAAGCAAGACTTTGAAACTTGGCACAAA ACAATGGGTGATTGCACTGCTAGTACTAGTGCTAGTGCTAGTGCTGGTGCTAGTGCAGAGATTGAGGTTATTTCTTCTAATGTGATCCAGAATGAAAGAG TGAGTGAGATTAGCAATGGAAATAATGAATGCCAAGATGAGATTGAGGGAGAATATGAAAATGAAACAGAAGAACCAAAATCCTTTTTCAGAACATGTTT TACATTGTTCATGACATTTTGTGACAAAAGAAGGATGGTTTCAGATGAGAACTAAAATGTTTCATGCAGGCTATCAACATATATAAGAAAGGGTCCTGAG TTTTTTATGAAGATTTCTTAGGAGCAAGCAAGATTTATAATGCATGCAGTGATTACTAAAATTACATTTTTATCCTTGTAGAGAAATATAGATTTACTCC TTCGTTAACGTAGAGAATACTTATTCAAATATCCAATACATCCTCAAAACTCATCATCTCTTACCCTCACACATATGATAACATGACAAATTCTTTTCTA TTTATTTTTTAACATTTATTTAGAAAATCTGTTACCTATATAAGAAAAAGTGTTACTCAATGAGTGTCAACC
• Tissue: pods
• Gene name: LI_gene_154805;
• Additional information: details;

Expression of Ll_transcript_374390

FPKM

• PAB: 1.4
• PNAB: 0.6
• PS1: 0.2
• PS2: 0
• PS3: 0.2
• PW1: 0.9
• PW2: 1.3
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_374390

• Blastp: TMV resistance protein N from Nicotiana with 36.74% of identity
• Blastx: TMV resistance protein N from Nicotiana with 36.74% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019417571.1)
• Pfam: TIR domain (PF01582.19)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;