| Id Trinity | TRINITY_DN47794_c1_g3_i10 |
|---|---|
| Name Transcript | Ll_transcript_375332 |
| Sequence | GGAAGAAAAGCTGAAAAACCAACAAAAGAAACAGTGTGAATCTGAATCCGTACCTCGTAGTTTGCATTATGAAATTTTGTTATCCTTTTGGTTTCTGATC GGATAGTTTTTCCATTCACTTTGTGGTCTCCATGGCCATCACCATCCAAACCTTGGAAGACAGGTATATTGCTTCTTGCAGGAGACACGGTATTTTGCCT AATACTACTATTTTGGCAAGCTTTTTCAAGGCTGAGATCAAAAAGTCCTGCAAAGAGCTGTGTAGTCTGGAGATTTTTATTGATGACCTTAAGGATATTG ATTGTGCTCCACTTCTTGACGTATGCATGAACCTTGATGCTTCTGAAATTGAAGCTGTTGACATACGTAATGAATCAGCATGTGCATTAAATGGAGAATA TGCATTGCCATTGATGCATGCTATTAACCAAAAGCTTCGAGTAGTTGACCTACAGGATCTGTCATTTGGAAAAGACTTCTTACGGGATATCTCAGAGAGA GGTTTAGCATGCCAAGTTTTGATATTGAGGTCTTCACATTTCCGGAAGCTGAATTTGACTGGGAAGTTCATGCAGATGCACACCCTTGATCTTGATTTTA GTTCATCTCTTACCAGTTTCCAGGAGGACTGCTTTAATTGCATGCCCAATCTAATGCGCCTCTCAATGTGCGAGACACGGATTACCAATCTTTGGACAAC TGTTGCAGCTCTCTCTAAGCTCCCTTCTTTGGTTGAACTAAGGTTTCAATATTGGCAATGCTGCAATGATGCTGGGACATCTTTTATCTCACCCAGTAGG AAGTCTGATAGCAGTGTTGATCTTGACCTGCTTAATAGAGTTCCTTTTACTGGTGAATCTTTCACTGATTCAAGGGTACCGACAGATCCTAACTTCAGTG CAGAAGATCCATTGATAAATCTGTATTCCTTTAATGAAGAAGTTATAAATCATGATGTTCAAAGCATGGATGAGGATTCATCAGATGATAGTGAAGTTGA CTTCACGAGTCATCGTCATAGATTCTGGCTGTCAGATGTGTTTCCTGGGTGGAATTTTCAAGTGCCTATTCAGAACGAGAATGAAGATGGAGAAGATTCA TCTCAAGGCCACTTTACAGGGCATACCACTGATGTTTCTATGAAGTATATGTCTTGTCATGCATCACCAATATGCTATGAGAAGCATTACAGAGAGTTCA TGATAGCTTCATTATCAAATCTGAAAGTTTTAGATAATTTGACGATCAGAAATAATGACAGGGAAAGGGCTTCTGGAATATATTCTCAATACTTTCAATA TCTTCCATATGGATGGAAGCAAAAAGAGAGTGTGGTAAATATCCTACGTAAGCGAGAAATAAAATCAGGCCACATTAAGGTGCGAACTTCCAAGTGTAGA CCGTTGAATCCTTCTGGAGAGTCCAAATACTTTTATACCAGGTCTCTATCTGCTGCTAAAATGGGGTCTTCAACTTGGCCTTCCTTGCACCCCCTTTCTC TATCAGGTTGTGAATTAGAAAGGGGCTTTCGTCCAAGGCAGTTTGAGTACCATCCATCTGACTCTAGCTTGATGGTCCTTGGAACTCTAGATGGTGAAGT AATTGTTATCAACCATGAGAATGAACATATTGTGAGTTATATCCCATCACTTGGAGCAATGAATAGTGTCTTGGGTCTCTGTTGGCTCAAACAATATCCC TCCAAGCTTATAGCAGGTTCAGACAATGGTTCCCTGAAATTGTATGACATCCACCATATACCAAGAAAAAATACTCGCACACATTGGAATTCTGGTTGTG TTACCTTCGATGAGTTTGACCAGTTGACATCTGTTCATGTTAACTCTACGGATGAATTATTTCTTGCAAGTGGGTACTCAAGAAATGTTGCTTTGTATGA CATCAACAATGGGAAGCGCTTACAAGTGTTCACAGATATGCATTCTGGGCATATTAATGTAGTCAAATTTGCAAATCATTCCCCGTCAATTTTTGCCACT TCTTCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAAAAACCAATATATCCTTGCTTCACTAATTCAAGTTCAAAAGGAAATGTGATGGTTTGCT TTTCTCCAGATGACCGATATATTCTAGCATCGGCAGTTGATAATGAGGTTAAACAGATCTCGGCTGCTGATGGTAGGCTTCACTTGGTTTTTGATATAGC TCCCACTGGAAGTTCTCAGAACTACACCCGTTCTTATTACATGAATGGGAGGGACTACATTATTAGTGGGAGTTGTGATGAACATGTTGTTCGTATTTGC TGTGCTCAAACTGGAAGACGCCTAAGAGATGTATCCCTTGAGGGAAAAAGCTTAGGAAGTTCTATGTTTGTTCAATCTCTGAGGGGTGATCCTTTTCGGG TAATCTTTATTTTTTATTGGACACCTTATTTTTTTCTGTCCATTTTTTCTTTGTAAGAGGGTGAGTGTCGGCACAACAGTAAGGTTTTTGCTTAGTGACT AAGGTCAGGAGTTCAAATCTTGAAAATAACCTCTTTGCTTGGTGGTAAGGCTGCGTACTTTTATTTTATTTTTATTGTCTTTGCATTTATATTTTAATTT CTGCCTACTCAGGTGGACTGTTTCTGCTGTCTTGGCTTTGCCATATTCTCACATAGCATTTATGTGATATGTCAAACGTCTACACTTTTTTGTACCTTTT TTTGTGTATTTTTGTCTTCATAACTGGAGATACCTGACACTTGCTGATTCTTATGGTTATGCCAAAGTGACTTTGATATGCTTGGTGTCACAACACAAAT CACTCATAATATATGACCCCTTTTTCTCGTCTCTCTTGTGTATAACCATTTATAACGTGTCCTGAAATGTGATTGACATCTTTGTTTCCTTAGAATCCAT TCATGGCATGAAAAATGAAATTGCTGCCAATTGGTATATGCATGTAAACTACTGTTGAACTGGACGTAATTTAAGGTAATTGTGTGGATGAGATACACAT TGTGAATGTTCTGATGGAAAGCAGGAAATAGTATTTATACTTTTATCCTTATTAAGAAACTCATTTCTTCCCTTAAAATAAAAAGAAACTCATTTCTTCA ATATAGTGAATTTCTATTCTCTTTCCCTTGTTATTATGATTTGGATATTGTAAAATGGTGTTTTTTTATATGAATTTCAAATGATGTATGCAGGATTTCA ATATGAGCGTATTAGCAGCCTACATGCGTCCTGGCTCCAAGTCTGAAATTGTCAAGATTAACTTACTAGCATCTAGTGGCCATGCCAATGATGATCCTGA TGAGGAGCGCCACCGCCCATCCCACAGTCTGGGAGCTTGATATAAGATTATATATGTACCATACAGTATGTATAGGTGAATTTCAATTGCTGTTTTGGAG AATTATAATTATAATTTTTTTTGTATTAAAAAGCTGTTTAGTTCAGCTTTGCCTTCAAGTAGGTAATTTAATAATACAACGAGTGTAGATAAAGGAAAAC ATCTGTAATAATTCTATATTATTATATTTGCCTTGATCACACACCATTTGGTGTAAAAATTGTGTCCTAGTTCGATTCAGTTGTAGTTCTTTAAATTACT TGAGTCAAGGTCCTGCTGGGAATAATTTTAACTTATAAGGTGAAAAAGGGAAGGATATTAGCCGCTCTTTCTAATTTAACTCCAAAGAAATAAGAGAATT CTAATTTAACTCCAAAGAAATAAGAGAATTCTTGCACAACACATGGGGTTAGTAACAAAATAACAACACACGTGAAATGTATCTAAAGAGGGGACAATAA CAAAGCACATAGGGACAAAGGGGTAGGAAGGCACCAGAAACCTTCGTGGTTGCTGAAAACTAATGGGATAAGTGCATGAACCATTACATGTTGTCTCTTC TTGGCTGGTACAAGCCACCGACTCTACCCATAGTTTATTCTAACGCCCATGGAACTCAGATTGATCCTTCTGGCTTACATTTTATTTTATTACTATCACC AACTTTGTTAAGGCAATTCCATAGATATCACCAACTTTGTTATTGCTTTTCCCAATTTGCCACCATTTTACAAAGTCCATCATTATATATATGCCATCAC AAACCCTATCACCCAATATTAGCAAAACATACAACAATGAAGCCTGTCTTTACCACACTGCTGTTTTGTTCCCTTCTTTTAAGCTTCTCTTTCTTGGAGT CAGCCATAGCATATGAAGATGCATGTAAGATTTTCTTCCACTCTTGGTGATATGTTTAATAAATACCTTTTTTCACTTTGAGCTTAGTTCTTTGGTTGGT GCAGTGATGTATATTTTTCCTTGTTAATGGCAGCCTTTTGCAGCAAGAAATGCTCTGCTAGGTGCTCTGTTGCAGGAGTTCAGGATAGGTGCTTGAAGTA CTGTGGAATATGCTGCGCAGAGTGCAAGTGTGTTCCTTCTGGGACTTATGGGAACAAGCACGAATGCCCTTGTTACAGGGACAAAGTTAACAAAAAGGGC AAGCCCAAATGCCCTTGAACTCAAATGAAGACCAAGCCTGAAGCCCCCACTCAGAATAAGAGAAGTGTGTTTTGTGATAGTAATTGAGAAATTTTAGCAG AGTTGGTTCAACTTATTGTTTCCATTAGTGGTTCCTAAGTAATGTTAGATCATTGTTAGTACTTAGTATGCCCATGTCTGTTGAATGTTAGTACTAGACT TGAGGAATAAATTTGTTGTAGTGTTGTTTTTTTTCTCATTTTCTCTGACTTGCTTATAAAACAAACAATATTTTATGAACATGATTCTCTTTTATGCCTA GGATTCTTCTGTATAATTCCTACTTCAAAATCTAAAGCAATGTGATGTGTCGCATGTCACTGTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_155539; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_375332
| Blastp | Katanin p80 WD40 repeat-containing subunit B1 from Strongylocentrotus with 25.37% of identity |
|---|---|
| Blastx | Snakin-1 from Solanum with 70.42% of identity |
| Eggnog | Katanin p80 (WD repeat containing) subunit B 1(ENOG410XQAC) |
| Kegg | Link to kegg annotations (373369) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428185.1) |
| Pfam | WD domain, G-beta repeat (PF00400.31) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |