Id Trinity | TRINITY_DN47794_c1_g3_i4 |
---|---|
Name Transcript | Ll_transcript_375323 |
Sequence | GGAAGAAAAGCTGAAAAACCAACAAAAGAAACAGTGTGAATCTGAATCCGTACCTCGTAGTTTGCATTATGAAATTTTGTTATCCTTTTGGTTTCTGATC GGATAGTTTTTCCATTCACTTTGTGGTCTCCATGGCCATCACCATCCAAACCTTGGAAGACAGGTATATTGCTTCTTGCAGGAGACACGGTATTTTGCCT AATACTACTATTTTGGCAAGCTTTTTCAAGGCTGAGATCAAAAAGTCCTGCAAAGAGCTGTGTAGTCTGGAGATTTTTATTGATGACCTTAAGGATATTG ATTGTGCTCCACTTCTTGACGTATGCATGAACCTTGATGCTTCTGAAATTGAAGCTGTTGACATACGTAATGAATCAGCATGTGCATTAAATGGAGAATA TGCATTGCCATTGATGCATGCTATTAACCAAAAGCTTCGAGTAGTTGACCTACAGGATCTGTCATTTGGAAAAGACTTCTTACGGTATATTATGGTGCTT GTTATGAATTATCTTTGTATGAAGGACATAATTTATGGTAGTACAAAGGACATAATTTATTCTAGCTTTGGTTTAGTTGTTTCAAGACTATATGTGGGAG GTTCATCATCAAGGGGAGATATTAACTTCATTGATTCACTTTCTGGCATTATGTTTTTCTTGCATACGTTGTTTTTTGTGACTAATATCAGGTTCTATTA TTAGGGATATCTCAGAGAGAGGTTTAGCATGCCAAGTTTTGATATTGAGGTCTTCACATTTCCGGAAGCTGAATTTGACTGGGAAGTTCATGCAGATGCA CACCCTTGATCTTGATTTTAGTTCATCTCTTACCAGTTTCCAGGAGGACTGCTTTAATTGCATGCCCAATCTAATGCGCCTCTCAATGTGCGAGACACGG ATTACCAATCTTTGGACAACTGTTGCAGCTCTCTCTAAGCTCCCTTCTTTGGTTGAACTAAGGTTTCAATATTGGCAATGCTGCAATGATGCTGGGACAT CTTTTATCTCACCCAGTAGGAAGTCTGATAGCAGTGTTGATCTTGACCTGCTTAATAGAGTTCCTTTTACTGGTGAATCTTTCACTGATTCAAGGGTACC GACAGATCCTAACTTCAGTGCAGAAGATCCATTGATAAATCTGTATTCCTTTAATGAAGAAGTTATAAATCATGATGTTCAAAGCATGGATGAGGATTCA TCAGATGATAGTGAAGTTGACTTCACGAGTCATCGTCATAGATTCTGGCTGTCAGATGTGTTTCCTGGGTGGAATTTTCAAGTGCCTATTCAGAACGAGA ATGAAGATGGAGAAGATTCATCTCAAGGCCACTTTACAGGGCATACCACTGATGTTTCTATGAAGTATATGTCTTGTCATGCATCACCAATATGCTATGA GAAGCATTACAGAGAGTTCATGATAGCTTCATTATCAAATCTGAAAGTTTTAGATAATTTGACGATCAGAAATAATGACAGGGAAAGGGCTTCTGGAATA TATTCTCAATACTTTCAATATCTTCCATATGGATGGAAGCAAAAAGAGAGTGTGGTAAATATCCTACGTAAGCGAGAAATAAAATCAGGCCACATTAAGG TGCGAACTTCCAAGTGTAGACCGTTGAATCCTTCTGGAGAGTCCAAATACTTTTATACCAGGTCTCTATCTGCTGCTAAAATGGGGTCTTCAACTTGGCC TTCCTTGCACCCCCTTTCTCTATCAGGTTGTGAATTAGAAAGGGGCTTTCGTCCAAGGCAGTTTGAGTACCATCCATCTGACTCTAGCTTGATGGTCCTT GGAACTCTAGATGGTGAAGTAATTGTTATCAACCATGAGAATGAACATATTGTGAGTTATATCCCATCACTTGGAGCAATGAATAGTGTCTTGGGTCTCT GTTGGCTCAAACAATATCCCTCCAAGCTTATAGCAGGTTCAGACAATGGTTCCCTGAAATTGTATGACATCCACCATATACCAAGAAAAAATACTCGCAC ACATTGGAATTCTGGTTGTGTTACCTTCGATGAGTTTGACCAGTTGACATCTGTTCATGTTAACTCTACGGATGAATTATTTCTTGCAAGTGGGTACTCA AGAAATGTTGCTTTGTATGACATCAACAATGGGAAGCGCTTACAAGTGTTCACAGATATGCATTCTGGGCATATTAATGTAGTCAAATTTGCAAATCATT CCCCGTCAATTTTTGCCACTTCTTCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAAAAACCAATATATCCTTGCTTCACTAATTCAAGTTCAAA AGGAAATGTGATGGTTTGCTTTTCTCCAGATGACCGATATATTCTAGCATCGGCAGTTGATAATGAGGTTAAACAGATCTCGGCTGCTGATGGTAGGCTT CACTTGGTTTTTGATATAGCTCCCACTGGAAGTTCTCAGAACTACACCCGTTCTTATTACATGAATGGGAGGGACTACATTATTAGTGGGAGTTGTGATG AACATGTTGTTCGTATTTGCTGTGCTCAAACTGGAAGACGCCTAAGAGATGTATCCCTTGAGGGAAAAAGCTTAGGAAGTTCTATGTTTGTTCAATCTCT GAGGGGTGATCCTTTTCGGGTAATCTTTATTTTTTATTGGACACCTTATTTTTTTCTGTCCATTTTTTCTTTGTAAGAGGGTGAGTGTCGGCACAACAGT AAGGTTTTTGCTTAGTGACTAAGGTCAGGAGTTCAAATCTTGAAAATAACCTCTTTGCTTGGTGGTAAGGCTGCGTACTTTTATTTTATTTTTATTGTCT TTGCATTTATATTTTAATTTCTGCCTACTCAGGTGGACTGTTTCTGCTGTCTTGGCTTTGCCATATTCTCACATAGCATTTATGTGATATGTCAAACGTC TACACTTTTTTGTACCTTTTTTTGTGTATTTTTGTCTTCATAACTGGAGATACCTGACACTTGCTGATTCTTATGGTTATGCCAAAGTGACTTTGATATG CTTGGTGTCACAACACAAATCACTCATAATATATGACCCCTTTTTCTCGTCTCTCTTGTGTATAACCATTTATAACGTGTCCTGAAATGTGATTGACATC TTTGTTTCCTTAGAATCCATTCATGGCATGAAAAATGAAATTGCTGCCAATTGGTATATGCATGTAAACTACTGTTGAACTGGACGTAATTTAAGGTAAT TGTGTGGATGAGATACACATTGTGAATGTTCTGATGGAAAGCAGGAAATAGTATTTATACTTTTATCCTTATTAAGAAACTCATTTCTTCCCTTAAAATA AAAAGAAACTCATTTCTTCAATATAGTGAATTTCTATTCTCTTTCCCTTGTTATTATGATTTGGATATTGTAAAATGGTGTTTTTTTATATGAATTTCAA ATGATGTATGCAGGATTTCAATATGAGCGTATTAGCAGCCTACATGCGTCCTGGCTCCAAGTCTGAAATTGTCAAGATTAACTTACTAGCATCTAGTGGC CATGCCAATGATGATCCTGATGAGGAGCGCCACCGCCCATCCCACAGTCTGGGAGCTTGATATAAGATTATATATGTACCATACAGTATGTATAGGTGAA TTTCAATTGCTGTTTTGGAGAATTATAATTATAATTTTTTTTGTATTAAAAAGCTGTTTAGTTCAGCTTTGCCTTCAAGTAGGTAATTTAATAATACAAC GAGTGTAGATAAAGGAAAACATCTGTAATAATTCTATATTATTATATTTGCCTTGATCACACACCATTTGGTGTAAAAATTGTGTCCTAGTTCGATTCAG TTGTAGTTCTTTAAATTACTTGAGTCAAGGTCCTGCTGGGAATAATTTTAACTTATAAGGTGAAAAAGGGAAGGATATTAGCCGCTCTTTCTAATTTAAC TCCAAAGAAATAAGAGAATTCTAATTTAACTCCAAAGAAATAAGAGAATTCTTGCACAACACATGGGGTTAGTAACAAAATAACAACACACGTGAAATGT ATCTAAAGAGGGGACAATAACAAAGCACATAGGGACAAAGGGGTAGGAAGGCACCAGAAACCTTCGTGGTTGCTGAAAACTAATGGGATAAGTGCATGAA CCATTACATGTTGTCTCTTCTTGGCTGGTACAAGCCACCGACTCTACCCATAGTTTATTCTAACGCCCATGGAACTCAGATTGATCCTTCTGGCTTACAT TTTATTTTATTACTATCACCAACTTTGTTAAGGCAATTCCATAGATATCACCAACTTTGTTATTGCTTTTCCCAATTTGCCACCATTTTACAAAGTCCAT CATTATATATATGCCATCACAAACCCTATCACCCAATATTAGCAAAACATACAACAATGAAGCCTGTCTTTACCACACTGCTGTTTTGTTCCCTTCTTTT AAGCTTCTCTTTCTTGGAGTCAGCCATAGCATATGAAGATGCATGTAAGATTTTCTTCCACTCTTGGTGATATGTTTAATAAATACCTTTTTTCACTTTG AGCTTAGTTCTTTGGTTGGTGCAGTGATGTATATTTTTCCTTGTTAATGGCAGCCTTTTGCAGCAAGAAATGCTCTGCTAGGTGCTCTGTTGCAGGAGTT CAGGATAGGTGCTTGAAGTACTGTGGAATATGCTGCGCAGAGTGCAAGTGTGTTCCTTCTGGGACTTATGGGAACAAGCACGAATGCCCTTGTTACAGGG ACAAAGTTAACAAAAAGGGCAAGCCCAAATGCCCTTGAACTCAAATGAAGACCAAGCCTGAAGCCCCCACTCAGAATAAGAGAAGTGTGTTTTGTGATAG TAATTGAGAAATTTTAGCAGAGTTGGTTCAACTTATTGTTTCCATTAGTGGTTCCTAAGTAATGTTAGATCATTGTTAGTACTTAGTATGCCCATGTCTG TTGAATGTTAGTACTAGACTTGAGGAATAAATTTGTTGTAGTGTTGTTTTTTTTCTCATTTTCTCTGACTTGCTTATAAAACAAACAATATTTTATGAAC ATGATTCTCTTTTATGCCTAGGATTCTTCTGTATAATTCCTACTTCAAAATCTAAAGCAATGTGATGTGTCGCATGTCACTGTT BLAST |
Tissue | pods |
Gene name | LI_gene_155539; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_375323
Blastp | DNA damage-binding protein 2 from Mus with 26.87% of identity |
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Blastx | Snakin-1 from Solanum with 70.42% of identity |
Eggnog | WD repeatcontaining protein(ENOG410XRID) |
Kegg | Link to kegg annotations (107986) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019428185.1) |
Pfam | WD domain, G-beta repeat (PF00400.31) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |