| Id Trinity | TRINITY_DN47843_c6_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_442883 |
| Sequence | TATTTTTCTCCAAGTGCTCCATAACTAAAGGAGAGTAACATAAATTACTTATTTTTGGGCCGAGCGAGGGTAACTATTGAGCACCAAACCGTATCGCATG GCATACAAACCCCGCGCTCGTCGCTGTCATTGAAACACTTTTTCTCTCTTCACTCTTTCATTTCTCACTCCAAAACCCCTTCCTTCAAATACCCCTCTCT CTTCTCTAGGGCACAGAAACAGTACAATACAATGAAACGCGACTTCTACGAAATCTCCGAAGACGAATGGGAGAACCACAACACCTCTTTCAAACCCTCT CGTGTTCTCAAAGCACCGAGGCTTTCTTCTTCCTCTTCCTCCTCTTCGCGGCTTCCGCCACCACCAATCGAGTCCTTCGCTTTTGGTTCCAATAACAAGC CTGAGGTTTCCGATCACGGCGACGACGATTGCGTGGAAATCGCGCCGAATTCGACACTTTTTCGGGAGAGCAACGACAGCCTGGACGACCTGGAGGACGA AGACGTTGATAATTCGACTGCAGCCCCCGCGCCGAACCGAGGCCGCCGGTTTATAATCGATGACGAAGATGATGACGTCAGCGACAGGGATGTTGCGGAA GTGTATGAGATAGAGTCCACTGAGGAGGAAGTGGAAGAGGTTGAGGATTTGAATGAAGGTGATGTGGTTGGTAAAGCTTTGCATAAGTGCTCGAAAATTT CGACGGAGCTGAGAAAGGAACTGTTTGGTTCTTCTGGTACCGCTTGTGAAAGGTACTCCGAGGTGGAATCTTCTTCAGTGAAAATTGTCACTCAGGAGGA TGTTGATGAAGCGTGCGGGTCTGAGGATTCGGATTTTCAGCCTCTGCTGAAGCCGTATCAGCTAGTTGGTGTCAATTTTTTGCTTCTGTTGCATCGGAAG GGTATCGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAGTTCAGGCTATCACATATTTAACTTTGTTGAAACATTTGCACGATGATCCTG GTCCTCATCTTATAGTATGTCCCGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAAGTGGTGTCCAACTTTCTCTGTTCTTCAATATCATGGGGC TGGACGAGCAGCATATTGCAAGGAGTTGAACTCCCTGTCCAAAGCAGGATTGCCTCCTCCATTTAACGTCCTTCTTGTGTGTTATTCACTTTTTGAACGA CACAGTCCGCAGCAGAAAGATGATCGTAAAGTTCTGAAGCGTTGGAGGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCT ATAGGTGGAAAAATCTGATGTCTGTTGCACGAAACGCTAACCAGCGCTTGATGCTGACTGGGACACCTCTTCAGAATGACCTACATGAGTTATGGTCATT GTTGGAGTTTATGCTGCCTAATATTTTTGATAGTGAAGATGTTGACTTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCC ATCTTGGGGCCATTTATTTTGCGGCGTCTAAAATCTGATGTGATGCAGCAACTTGTTAAAAAAATACAGCAGGTTGAATATGTTGTTATGGAAAAGCAAC AAGAACATGCTTATAAGGAAGCCATTGAGGATTATCGTGCTGTTTCACAAGCTCGGATTGCAAAGTGTTCCGACCTTAACTCCAAAAATGTTCTTGAAGT CCTTCCTAAACGGCAGATAAATAATTATTTTGTTCAGTTCCGCAAGATTGCGAACCACCCCTTGTTGATAAGGCGGATCTATAATGATGAGGATGTCATT CGCTTTGCAAGGAAGCTACATCCTGTAGGTGCTTTTGGCTATGAATGTACATTAGACAGAGTTATAGAGGAACTTAAAAGTTACAATGATTTCTCTATTC ACCGGGTAAATCTTATACCAAAGACAATTTGTTTCCTCACTTAGTATCCCCATGTTTGGCTTTCACCAATATGCTCAAGTAGTATACGATTTGTTATCGG GTGCCAAGTGGTAGTGGTTTTGGCTTATAAAATGTGAGTTAATACATGCTTTCTGCTATTATATCATCTGAATGTAGTGATAAAGGTCAAAGTAATAAAT GATTTGATAGAGGGAAGTCATCCTAAAAGAAAAATCATAGGGAAAATGACATCCTGAAAGGGCTATAAAATGTAATAATTCTGTCCATTCTCTCCTTGCA TATCATGATAGAAATTTCTTGAAACAACCATGAGCAGAGAACCAGAGAGAAGTCATAAACTTCATCTGGGTGATGGACAATAAGAGCCGGAGGGTTATAT TGTAGCTTAAAAGAGAAATATAGTGATAAACAATGAGCAGGAGGGTTATATTGTAGCTTAAAAGAGAAATATAGTGATAAACATTGACCTTTAAATCCTT GTTACTAGTTTTGCCTATAGTTTTTCACTTTTTCTTGCTCTACCCTTACCCTTAGCGATTGTGCTACCCTCCATCTAATTTACTCTCCTCACTAGACCTT CCATAGGCCTTCACCACATGTGTCAAAAATATTTAAGCTGAGGTTCTCCCATCCCTAATCCTATTTACAAGAAGTATGAAATGATACTTCGTATGCTATA GAACCCATGTTGCACTAACACAAGTCAACAACCCAACATTTAGTTGCTGCTGACTTTCTTTCTGTTGTGTCAATTCCCTTCTATTACAACAATAACCAAG TCTTAATTCTACTAGATGGGGTTAATTAAATGGATAAAACAGCGCCATGATGTTGTATCATATCAGTCCATTGATAAAACATTGATGTCTAAATTTTTCC TAATCATTTCACCCATGATTTTTCTTGGCTGAAGTTGGACTAACCTCCATTTGGTCTACTCTCCTTCATGAGGCTTCTAACAGTCATTTCCACACATCCC CAAACCATCTAAGCTTCTACTTCACTATGGTGTCAAGGATAAAAAGGGGATTCTTTCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGTCCCTATCA AAACTTCTTCCTTCACTGAAGAAGGGTGGCCATCGTGTTTTGATCTTTAGTCAGTGGACATCAATGCTTGACATATTGGAGTGGACTTTGGATGTCATTG GGTTTACCTACAAACGGCTTGATGGAAGTACACAGGTAGCAGAGAGGCAAACAATAGTGGATACATTCAATAATGATACTTCCATATTTGCATGCTTGCT TTCCACAAGAGCTGGAGGTCAAGGCTTGAACTTAACCGGAGCTGATACTGTCGTAATTCATGACATGGATTTTAATCCACAGATTGATAGACAAGCAGAA GACCGTTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGTATTCGTCCATCCTTTCTTTTTCACTCACATGTTTATTAGCAGAAATATTAA ACCTTTTAAATTGGATCTATTTTAATCTTTTGCTGGAGTATTTTATCATGATGTATTCCACTGTAGGCTGGTGACCAAGGGAACAGTTGATGAAAACGTA TACGAGATTGCAAAGAGAAAGCTGGTATTGGATGCTGCTGTCCTTGAGTCCATGGATGTGGTTAATGAAGGTGACATGCCTGAGAAGACCATGGGAGAGA TATTGTCTGCAATTTTGTTGAGTTAAAAATTGAGCCTAAGAAAACAATTTACTGAAGAGTTAAATGGGGTATACCGAAAGTGTAAAGTTTTATACAATGA GCCTATCATTCATCATTAATGTGTATGACTTTTATTTAACATTCAGTGATTGTCCGCATGTCAATGGTGGATGATGTGCTGATAGTGCAAAAATCTTTAC ACCATCAATGCATAACCTATTTTCTCTTTGCTCCACCCCTTTTTTCTTCTTTGTAGGTTTGCACGAATTATATTTCTGATTCTGATCTTGTATTAGCCAT ATGATGATTTCAGAGTAAAGGGAATTGGCCGCAGGTGTACATTTAGCCTTAATTAATCCATGTATTGATGACAGTGAATAATCATTGTCGGTATCAATAG GAGAGTTAGTATAAATAAGTCACTGTAGAAGTTAGCAATTTTTTTGAACTCTTGTTGGAGCCCCAATGATGAAAGCTCCCCCTTGCATTTTAAATTTTCC ACATTCCTATCTTTTCCTGTTATACTTTCTGCTATTTTCATTGTTCCATTTGCTGGAAAGAATGTTCTAGTTCTGTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_155998; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_442883
| Blastp | Protein CHROMATIN REMODELING 19 from Arabidopsis with 67.24% of identity |
|---|---|
| Blastx | Protein CHROMATIN REMODELING 19 from Arabidopsis with 68.54% of identity |
| Eggnog | helicase activity(ENOG410XNUT) |
| Kegg | Link to kegg annotations (AT2G02090) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019461602.1) |
| Pfam | SNF2 family N-terminal domain (PF00176.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |