Id Trinity | TRINITY_DN47873_c3_g1_i1 |
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Name Transcript | Ll_transcript_443411 |
Sequence | AGGTGCTGGCCTAGAATCTTCCACTCTCATTGTTGGTATTGATTTCACAAAGAGCAATGAGTGGACAGGTGGAAGATCATTTCAAAGGAAATGCTTGCAT CACATTGGTCATGAACAGAATCCATATGAACAAGCTATATCTATCATCGGGAAAACGTTATCTTCCTTTGACGAGGATAACTTAATTCCATGTTTTGGAT TCGGAGATGCATCAACACATGACCAGGAAGTTTTTAGTTTCTTTCCTGATGAGAGATTTTGTCATGGATTTGAAGAAGTATTGGGACGGTATCGGGAATT GGTCCCTCAATTAAAGCTCGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAACAAAGTGGAGGCCAATACCATGTCCTA TTGATTATAGCAGATGGACAGGTCACGAGAAGTGTTGACACCCAAAACGGGCAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTTAAAGCTA GTGAATATCCCCTGTCTATCATATTGGTTGGAGTTGGAGATGGGCCGTGGGACATGATGAGAGAATTTGATGATAACATCCCTTCCCGAGCCTTTGATAA TTTCCAGTTTGTGAATTTCACGGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAGCAGAGTTTGCACTTGCTGCCTTGATGGAAATACCCTCT CAGTACAAGGCAACACTAGAACTTAATATATTGGGTACTCGTAGAGGGAAAGATATAGACAGGATTCCTCTGCCACCACCTCTATATGGTGCAGCATCTT TCAACTCCCCAAAAACTTCCCGTCAAAGCAGTTTCAGTCCTAGTGCACCATCTCAAGCTCACAGACATGATGTTGGCACGGATCGCTCTGCAAGTTCTGC TTCTGATAATCAGGTACCTCATCTCTTCGCTTACTTTGCTGTTAGTTTGCTTTCTTTAGTTTGCTCCCATCATAGTAAATATCTACCTCTTGTAGTGGAT CTTCTCATGTTTATTTTTCACATAAGATTAATGTGAAAGAGAGAAGCACAATGGCTTTAAAAATGACCCCTCTTAGCAGGCCCATTTAAAGTTTGGGGAG TAAGGTGTTTGTATCTATCACTATATCTCTGTACATGACCTTCTCGTGCGAAAAAAACACTCGAGAGAGGATCTAATATACATGACTTAATTCAAATTTA ATCCTCCTATTGTGCTGGTGTTTCATTATTTGAACACCCAAAATACCATACCTAAATGACATTCATCCATTTAAGTTTTACATTCAGTATTTGACACCAT TCAATCCCAATGAAATAAACATATGGTTTTTCCTGAGATGTCTAATCCGGCGGTACTAAAATTATGATTGACTTTGCTACATAATCCTTACAGTTTTGTC CCATTTGCCTCACCGATCCGAAGAACATGGCATTTGGTTGTGGGCATCAGACATGCTGCGAGTGCGGACAAGATCTCGAGCTATGCCCCATTTGCAGGAG TGCCATTGACACTAGAATAAAACTTTATTAGAAGATGATATCTTTGAAATCTTGTCATGATTTTTCATGTTGAGATTTTTACTCCTGACCGGAGATGCTT CTGGAAATCATAATTTTTAATACCTTTCTTTATTCAAAAAAATTATCCTCAAATCTAGGACTTAGTTCTTTCAAAGATTAATATTTATCCTTACAATTAA TTATATTTTTGGTTTGTGATTTGGGGTGTTACACAACTTGGAAATTAAACAATAATAACCCTCAAAATTGATTACATCACTCATAATTGAATATAGTATC CTTAAATAATGAAAAGCTTGTTTTAGATCCCTGTAATAGATCATATATAAGTGATGACCATTGTAACACTTAAAGCTTAAATAATGAAAAGCTTGTTTTA GATCCCTGTAATAGATCATATATAAGTGATGACCATTGTAACACTTAAAGCTTAA BLAST |
Tissue | pods |
Gene name | LI_gene_156246; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_443411
Blastp | E3 ubiquitin-protein ligase RGLG2 from Arabidopsis with 77.74% of identity |
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Blastx | E3 ubiquitin-protein ligase RGLG2 from Arabidopsis with 78.6% of identity |
Eggnog | copine family(ENOG410XPC8) |
Kegg | Link to kegg annotations (AT5G14420) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019415571.1) |
Pfam | Copine (PF07002.15) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |