| Id Trinity | TRINITY_DN47873_c3_g1_i11 |
|---|---|
| Name Transcript | Ll_transcript_443452 |
| Sequence | AGGTGCTGGCCTAGAATCTTCCACTCTCATTGTTGGTATTGATTTCACAAAGAGCAATGAGTGGACAGGTGGAAGATCATTTCAAAGGAAATGCTTGCAT CACATTGGTCATGAACAGAATCCATATGAACAAGCTATATCTATCATCGGGAAAACGTTATCTTCCTTTGACGAGGATAACTTAATTCCATGTTTTGGAT TCGGAGATGGTAATTTGAGAAACATTATTAGGGATTACAGTTATGCATTAGAATCGCATGTTCCAGTGAGTTTACATTGTGTTGGGTTTAAAAACATGCA GCATCAACACATGACCAGGAAGTTTTTAGTTTCTTTCCTGATGAGAGATTTTGTCATGGATTTGAAGAAGTATTGGGACGGTATCGGGAATTGGTCCCTC AATTAAAGCTCGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAACAAAGTGGAGGCCAATACCATGTCCTATTGATTAT AGCAGATGGACAGGTCACGAGAAGTGTTGACACCCAAAACGGGCAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTTAAAGCTAGTGAATAT CCCCTGTCTATCATATTGGTTGGAGTTGGAGATGGGCCGTGGGACATGATGAGAGAATTTGATGATAACATCCCTTCCCGAGCCTTTGATAATTTCCAGT TTGTGAATTTCACGGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAGCAGAGTTTGCACTTGCTGCCTTGATGGAAATACCCTCTCAGTACAA GGCAACACTAGAACTTAATATATTGGGTACTCGTAGAGGGAAAGATATAGACAGGATTCCTCTGCCACCACCTCTATATGGTGCAGCATCTTTCAACTCC CCAAAAACTTCCCGTCAAAGCAGTTTCAGTCCTAGTGCACCATCTCAAGCTCACAGACATGATGTTGGCACGGATCGCTCTGCAAGTTCTGCTTCTGATA ATCAGGTACCTCATCTCTTCGCTTACTTTGCTGTTAGTTTGCTTTCTTTAGTTTGCTCCCATCATAGTAAATATCTACCTCTTGTAGTGGATCTTCTCAT GTTTATTTTTCACATAAGATTAATGTGAAAGAGAGAAGCACAATGGCTTTAAAAATGACCCCTCTTAGCAGGCCCATTTAAAGTTTGGGGAGTAAGGTGT TTGTATCTATCACTATATCTCTGTACATGACCTTCTCGTGCGAAAAAAACACTCGAGAGAGGATCTAATATACATGACTTAATTCAAATTTAATCCTCCT ATTGTGCTGGTGTTTCATTATTTGAACACCCAAAATACCATACCTAAATGACATTCATCCATTTAAGTTTTACATTCAGTATTTGACACCATTCAATCCC AATGAAATAAACATATGGTTTTTCCTGAGATGTCTAATCCGGCGGTACTAAAATTATGATTGACTTTGCTACATAATCCTTACAGTTTTGTCCCATTTGC CTCACCGATCCGAAGAACATGGCATTTGGTTGTGGGCATCAGGTAAGGAAGCAAAGCTCTTGGCTGTTTTTTCTTATGCATTTTAGTTGATTGGATGCTT ATTAGGCATGTGAGTCGTGTTTTTTTAATTTGCAGACATGCTGCGAGTGCGGACAAGATCTCGAGCTATGCCCCATTTGCAGGAGTGCCATTGACACTAG AATAAAACTTTATTAGAAGATGATATCTTTGAAATCTTGTCATGATTTTTCATGTTGAGGTATGAAACCACGAAAATGTTTGCTTATTAACTTCACATTG TAAATATTATTGGTATTTATTCGTTTAAGTCTATGCTTTAAGCACATTTTATATTAGAGTTGGGTTTTGGGTTCTGTGTTATATCACATTAAATATTAAT ATTAATTGTGTCCATTCATCAATTGGTTCAAAACAAGGATGTTTCTTGAATCCAATACCAAAAGTTTTCTATATATCTGTACCAACCGAATGATATTTTG TGAAATACATAAATGTATTAGTAATCAGAAATTAAATGAGGTGTTATTTATTACTAGGTAAAATCCTATTAGGTTGGTATAGAGACATAAAAATTTTGTT ATAGAGGATTTGGGTTCCATTTTGATGTCATATTTTAAATGTTGAAATAGAGAACTCACTTCAAGAATACAACTATGAAATTTGTTGTCATTTCATACTT AGAAGTTAAGCGTTTCTTTGATATTAAAGTTTGTTGTTTGTACTTATTTTAAAAAAAAAACAAGTTAAAAGTTAGAAGTATGTTTATAAGTTCTTGAACC ATGTTACTACAATGTGAGTAATCCTTATAATGAACTTGGGAATGATGTGCTACACCGTGGTATATATATTATAGAGTGTAATATCTTTCTGTTGGTTGTA TATAGATTTATACATAATTATTATATTATCTACTATTTATTTATATTACTTTTTAATGAATCAATGATAATAAAATATGATAATGATAGTGTATAAAATG CATACATTATAAGTGCGTAATTGTTTTTGTATATTATATTTACCATATGAGACATTTAAGAAATGATGTTTTATTCCTTTCTTTCTAACAATATATTTAT GAAGTCATATTATGCAGATTTTTACTCCTGACCGGAGATGCTTCTGGAAATCATAATTTTTAATACCTTTCTTTATTCAAAAAAATTATCCTCAAATCTA GGACTTAGTTCTTTCAAAGATTAATATTTATCCTTACAATTAATTATATTTTTGGTTTGTGATTTGGGGTGTTACACAACTTGGAAATTAAACAATAATA ACCCTCAAAATTGATTACATCACTCATAATTGAATATAGTATCCTTAAATAATGAAAAGCTTGTTTTAGATCCCTGTAATAGATCATATATAAGTGATGA CCATTGTAACACTTAAAGCTTAAATAATGAAAAGCTTGTTTTAGATCCCTGTAATAGATCATATATAAGTGATGACCATTGTAACACTTAAAGCTTAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_156246; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_443452
| Blastp | E3 ubiquitin-protein ligase RGLG2 from Arabidopsis with 76.65% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase RGLG2 from Arabidopsis with 77.83% of identity |
| Eggnog | copine family(ENOG410XPC8) |
| Kegg | Link to kegg annotations (AT5G14420) |
| CantataDB | Link to cantataDB annotations (CNT0001359) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415571.1) |
| Pfam | Copine (PF07002.15) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |