| Id Trinity | TRINITY_DN47940_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_421914 |
| Sequence | AAAAAAAGGTATATGGGCCAAGAGGCATAGAACAAAAACATGGTAAAAGACAGGAAAGCCCCTTAAGGCCTTTAAAAAGGGTAGCTTTTCTTTGAAGCTA ATCAAATCTTAATCGGTCTCTTTTTCTTGTAGAATCTCCGTTTCTCTAAGCCCCTGCTGATTCGTCGCTATTTCGTTCCAAACCCTGATTCGTCTCTATT TCGTTACAAACTCTATTTCGTTACAAACCCTATTTCGTTACAAACCCTGATTCGTCTCTATTTCGTTACAAACCCTGATTCGCTCCTCTTTCTTCTTCTT CAGTTTTTGCCACACACCGTTCTCTCTCTTCAACGCTTTTCCATTTGATTCTCACTCATCCCTCGGATCTGTTCACAATTCCAGGGATTCATTATTGACA TTTCTTGAAGTAATTTTAATCTGCTACATTTGCAACTACAATGGCTTCTTTGGATATGTCACTCGATGATAGAATAAAGAACAGGAGTAGCAGAGGGCGA GGGAGAGGACGTGGAAGAGCTGGCTCTGGCCGTGGAGCAAGCAGGACCTTTAATGGTGGAAGAGTGTCCGGTGCTGCTAATGGTGGAAGAGTGTCTGCTG CTGCTAATGGTGGAAGAGTGTCTGGTGCTGCTCGCCGGGGTCCTCTTGTTCTTAATGCTCGGCCATCATCTTATGCTATTGCCAAGTCTATTCGTGGAAC AAGGCCTTTTCCATGGCAGCGTACAGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATATCAGGAATAGATGTAGGCACGAAGTTGTATATTTCCAAT TTGGACCATGGAGTAACGAATGGAGACATAAGGGAACTTTTCTCTGAGCTTGGAGACTTGAAGCGCTATGCTGTTCATTATGATAACAATGGACGTCCAA GTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGA GATTGTTGGTGCTAATGCGGAATTACCTATGACTGCTCGTGTGAATGTCACTGGGGTAACCGGGAGGAGGAAGAGGACAGTTGTGATGACGTAAGTCACT TCTATTATGAATAGAGGCTTTTGTTTCAATGATTGTGAATGTGTATATGTCTATCTTTATCTGTCACTATCTGTGGGATGGCTGGCACTTTTCTTTTTGA TATCTGAAAAATATTGTCATTGCTAAATGATTACAACTTGCAGTAACTTGCGAATATATTTTTCTTCAAGGCTACCAACTTCTTTATAGTTCTTCCTCCA TCTCTTTTTTGATAAAAAGAATATATACTACTTCAGATTGTGTGCTGATGATATATGTGTTGCAGGCCTAGAGGTGTTCAAGCTGTTGGTCCAGCTGTAG GTCCAGCTGTGCCTAATCGTGGTGCTGGGTAAGTCGTTTAGATCTGTATAAATGATATATTCTCAATCTTACTTTGCTAACAAAAACTATATTGGACTGA TAAAATTTGAGTGCATCACTTTACCAAAATAATAATTAAATATGGTAAATCATAGTAAGTATGAAGATTTTGGTCATTTATTTTGAACTTTGTTCAACTA TGTCTTTGTTTAGCACAGGACTAAGTGGTTTTTGCTGTGGTCTTTAAGGTGTTCAACTATGTCTTTAGCAAAATAATAATTAATATGCTAATCCTTTTAC ACAAGAGAATGGATTAAACCTATTCCCACGAGCAGTTTGATGCCATCTTAAGATGTCGGTGTGAAGAGTCATAGGGCTATACAATTGTTTTTGATGGCAT GAAAAGCTAAATGCTGAGCAGGAGCATTTTAGAATTTAAGCTTTGAGAAATCTGATACATTTGAAGATGCTCTTGTGAAAAATCATGGGCTATGTAATTC ATTTTGATGGCATGAAAAAGCAAAGTGGCTGATAGAAAATAGACTATGAATATTTAAACTAATCCTTAAAACATTTAAATGTTTAAGGTTTCTCTTTGAG ATGGGTATGTCCCATGAACTGGTTTATCACCATGTTTAGACATTTATATTGAGCTGCGTGCATACTTGCATGCATGCAATCTTTGAACAATTTATGATTT TTTTAAATTTTATACTGTATAGAACTTGAGAAGTGTAAAGCAAATGAATTGCTCAGGCTGCCAAGATGTTTATTGTTTTGGTTTGAAATTTTTTCTTTCT ATATGCTTGAGTGAAGGTGAGCTTCAATGGCAGGCTTTTTGCTTTGCCAGTGTTGCAGTGGCAAAAATGGCCCATCTTAATGAAATTCAGGCTGTGATGA TAAGATGTAAATGTCATTATGTTTTCTTTCCACCGTAGTTATTTTCCGTAGATTAAATGTTCGTCTTTATACAGCTGGGGACGTCGTGGTGGCCAAAAGA ATGGGAGTGGTCGTGGCCGGGGTGGAGTCCGTGGACGTGGCCGGGGTGGAGGCCGAGGTGGTCGTGGGAAAAATGAGGCCGTTGAGAAGTCAGCTGAACA ACTTGACAAGGAACTGGAAACGTATCATGCTGAGGCCATGAACATCTCATGATTTCTGAAGCTGCGAGGTTAATATTTTATGCGAGCCAAAAGATGGTAT TGGCTCTGTTGTACAAAAACAGCTGTGTCTCCTTGGTCTTTATTTGAATTTTCTACTACATTTTACTTTTAATTGCTCTTATTTGGAGCTGAATGATTAG GTGGGTGACTTTTGTAAGTTTTCAGGTTATGTACTATTCGATTTGCCTATTATTTTGAAGTTGTGTATTTAGTCTTATTGGAAGATGTGTAAGTGAGTCA CTTCTCTATAAAAATGAACCTTTTATGCACCTAGGTAGTAGGAATGCGTTAGGTATTACCATTCTCTAAATATTATTTATCAAATTGGCCTGGTGACAAG TGATGTGAAGCTAGAAAGTTTGATTTTTTGGATTGACACTTGTTGGATGTGATGATACTCTTGGTAACACTAAAAAAATTCTCTAAATATTAATTAGGTT AGGATGAAGATAAATTATTAGTTCTTTATGGATACTTATCCTTTAACCTAGCTTCTAGCAATTTCTAATAATTATTCAATGGTTAAGCATTATATCACTA GTTTTGAGCCAAGCTTCGCCTTGAAGAACTGTAGGGAGCACATCTACTGTCGCACTTTTTGTACCACTCAATGTATCATCACTTGTAATTGGTTAAAAAA ATTATTTAAATGAATATTATAATTATTAAATATTTTTTCTGGCCAATCATATCTCCTGGCACATAGAGTGGCACAAAGAAATGGAACAGCAGATGTAGAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_156770; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_421914
| Blastp | THO complex subunit 4D from Arabidopsis with 65.79% of identity |
|---|---|
| Blastx | THO complex subunit 4D from Arabidopsis with 66.41% of identity |
| Eggnog | Polymerase (DNA-directed), delta interacting protein 3(ENOG4111JAW) |
| Kegg | Link to kegg annotations (AT5G37720) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019439484.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |