Ll_transcript_421898

• Id Trinity: TRINITY_DN47940_c0_g1_i5
• Name Transcript: Ll_transcript_421898
• Sequence: AAAAAAAGGTATATGGGCCAAGAGGCATAGAACAAAAACATGGTAAAAGACAGGAAAGCCCCTTAAGGCCTTTAAAAAGGGTAGCTTTTCTTTGAAGCTA ATCAAATCTTAATCGGTCTCTTTTTCTTGTAGAATCTCCGTTTCTCTAAGCCCCTGCTGATTCGTCGCTATTTCGTTCCAAACCCTGATTCGTCTCTATT TCGTTACAAACTCTATTTCGTTACAAACCCTATTTCGTTACAAACCCTGATTCGTCTCTATTTCGTTACAAACCCTGATTCGCTCCTCTTTCTTCTTCTT CAGTTTTTGCCACACACCGTTCTCTCTCTTCAACGCTTTTCCATTTGATTCTCACTCATCCCTCGGATCTGTTCACAATTCCAGGGATTCATTATTGACA TTTCTTGAAGTAATTTTAATCTGCTACATTTGCAACTACAATGGCTTCTTTGGATATGTCACTCGATGATAGAATAAAGAACAGGAGTAGCAGAGGGCGA GGGAGAGGACGTGGAAGAGCTGGCTCTGGCCGTGGAGCAAGCAGGACCTTTAATGGTGGAAGAGTGTCCGGTGCTGCTAATGGTGGAAGAGTGTCTGCTG CTGCTAATGGTGGAAGAGTGTCTGGTGCTGCTCGCCGGGGTCCTCTTGTTCTTAATGCTCGGCCATCATCTTATGCTATTGCCAAGGCAAGCTCAAAAAC ATGGATGCTTATATATGTGCTTGAGATTCTGATTTTCTAACCATACCTAATCATGAGAGGATTCAGCAATTTAGAAACTCAAATCCAAGAAGACTCCTAG TTTAATATTTGTTCCACAGTGAAGCTCATGCTCGATCATTTTGCATCCGTAGTTCCATAATGTCACAATTAATATACTTCTAAGCATTGTTTGCTTCTGT TTTGGGGGCTTTGCTACAGATCTCTGATATTTGCAGGAATTCTTTGCTGATCCATAGCATATTATATGAAGAAGCTTCATTAGGTGAATTTGAAAATAGA GATCTTACAAGTAGCACAAAAATCATTTTAACTATAAATGGGGTTTAATCCTCTAAACCATGCTAATCCATTTCATTTAGATGAGATGACATCAAAAGTT TGGCTGGTTTGTGTGGACCGGTGTTTTACTCGATCCATTTGCTAAGTTGGGTTCTACCGTGCAAGGAATCAGTTTACTTCCCTATTTCATCATATTTTGC AAAGGAGCTTTTCACATAACATCAGCACTGGAGCTCCCATCTACCACCTTTCACCTAGATTAGTGATGTTTGAGTAATAGGCTTTCCTTAATATATTATC TTGGCCAGAGCAAAGAACTACTTCATTGACAGTGCTTTTTGTTTTTTGTTTTCTTATGGGGATTTTCCTTCTCTAACTAAACTTGAAGAATGATGAATGT ATTTTTCTGGCCATATCTGACATGTTCTGTTTGCCACTCTGGAATGTGTCCTGGTTGCTTCGACCAGTCTATTCGTGGAACAAGGCCTTTTCCATGGCAG CGTACAGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATATCAGGAATAGATGTAGGCACGAAGTTGTATATTTCCAATTTGGACCATGGAGTAACGA ATGGAGACATAAGGGAACTTTTCTCTGAGCTTGGAGACTTGAAGCGCTATGCTGTTCATTATGATAACAATGGACGTCCAAGTGGTTCAGCTGAAGTTGT CTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCTAATGCG GAATTACCTATGACTGCTCGTGTGAATGTCACTGGGGTAACCGGGAGGAGGAAGAGGACAGTTGTGATGACGCCTAGAGGTGTTCAAGCTGTTGGTCCAG CTGTAGGTCCAGCTGTGCCTAATCGTGGTGCTGGCTGGGGACGTCGTGGTGGCCAAAAGAATGGGAGTGGTCGTGGCCGGGGTGGAGTCCGTGGACGTGG CCGGGGTGGAGGCCGAGGTGGTCGTGGGAAAAATGAGGCCGTTGAGAAGTCAGCTGAACAACTTGACAAGGAACTGGAAACGTATCATGCTGAGGCCATG AACATCTCATGATTTCTGAAGCTGCGAGGTTAATATTTTATGCGAGCCAAAAGATGGTATTGGCTCTGTTGTACAAAAACAGCTGTGTCTCCTTGGTCTT TATTTGAATTTTCTACTACATTTTACTTTTAATTGCTCTTATTTGGAGCTGAATGATTAGGTGGGTGACTTTTGTAAGTTTTCAGGTTATGTACTATTCG ATTTGCCTATTATTTTGAAGTTGTGTATTTAGTCTTATTGGAAGATGTGTAAGTGAGTCACTTCTCTATAAAAATGAACCTTTTATGCACCTAGGTAGTA GGAATGCGTTAGGTATTACCATTCTCTAAATATTATTTATCAAATTGGCCTGGTGACAAGTGATGTGAAGCTAGAAAGTTTGATTTTTTGGATTGACACT TGTTGGATGTGATGATACTCTTGGTAACACTAAAAAAATTCTCTAAATATTAATTAGGTTAGGATGAAGATAAATTATTAGTTCTTTATGGATACTTATC CTTTAACCTAGCTTCTAGCAATTTCTAATAATTATTCAATGGTTAAGCATTATATCACTAGTTTTGAGCCAAGCTTCGCCTTGAAGAACTGTAGGGAGCA CATCTACTGTCGCACTTTTTGTACCACTCAATGTATCATCACTTGTAATTGGTTAAAAAAATTATTTAAATGAATATTATAATTATTAAATATTTTTTCT GGCCAATCATATCTCCTGGCACATAGAGTGGCACAAAGAAATGGAACAGCAGATGTAGAC
• Tissue: pods
• Gene name: LI_gene_156770;
• Additional information: details;

Expression of Ll_transcript_421898

FPKM

• PAB: 8.1
• PNAB: 8.6
• PS1: 11.4
• PS2: 8.4
• PS3: 15
• PW1: 6.3
• PW2: 7.2
• PW3: 8.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_421898

• Blastp: THO complex subunit 4D from Arabidopsis with 54.01% of identity
• Blastx: THO complex subunit 4C from Arabidopsis with 62.86% of identity
• Eggnog: Polymerase (DNA-directed), delta interacting protein 3(ENOG4111JAW)
• Kegg: Link to kegg annotations (AT5G37720)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019439484.1)
• Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;